LOCUS BC090928 3772 bp mRNA linear HTC 27-OCT-2008
DEFINITION Homo sapiens SLAM family member 6, mRNA (cDNA clone IMAGE:3066534),
with apparent retained intron.
ACCESSION BC090928
VERSION BC090928.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3772)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3772)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: M. Bento Soares, University of Iowa
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 199 Row: b Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38327616
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..3772
/db_xref="H-InvDB:HIT000334290"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3066534"
/tissue_type="Lymph, normal germinal center B cells"
/clone_lib="NIH_MGC_50"
/lab_host="DH10B"
/note="Vector: pT7T3-Pac"
BASE COUNT 1101 a 885 c 787 g 999 t
ORIGIN
1 aaaacattga ctgcctcaag gtctcaagca ccagtcttca ccgcggaaag catgttgtgg
61 ctgttccaat cgctcctgtt tgtcttctgc tttggcccag ggaatgtagt ttcacaaagc
121 agcttaaccc cattgatggt gaacgggatt ctgggggagt cagtaactct tcccctggag
181 tttcctgcag gagagaaggt caacttcatc acttggcttt tcaatgaaac atctcttgcc
241 ttcatagtac cccatgaaac caaaagtcca gaaatccacg tgactaatcc gaaacaggga
301 aagcgactga acttcaccca gtcctactcc ctgcaactca gcaacctgaa gatggaagac
361 acaggctctt acagagccca gatatccaca aagacctctg caaagctgtc cagttacact
421 ctgaggatat taagacaact gaggaacata caagttacca atcacagtca gctatttcag
481 aatatgacct gtgagctcca tctgacttgc tctgtggagg atgcagatga caatgtctca
541 ttcagatggg aggccttggg aaacacactt tcaagtcagc caaacctcac tgtctcctgg
601 gaccccagga tttccagtga acaggactac acctgcatag cagagaatgc tgtcagtaat
661 ttatccttct ctgtctctgc ccagaagctt tgcgaagatg ttaaaattca atatacagat
721 accaaaatga ttctgtttat ggtttctggg atatgcatag tcttcggttt catcatactg
781 ctgttacttg ttttgaggaa aagaagagat tccctatctt tgtctactca gcgaacacag
841 ggccccggtg agcattcaga ctcttaactc tccatcataa agcagatggg aagagccaaa
901 tggaagagag agggggatgg cagagggctg gataatgaca gaggaaggag tcagaatgtc
961 attactcaga ccacatgctg tgaggggaga tgatctgtaa tcatgggtcc tacatggttc
1021 acaggcatag gcatgtgaac cagtcactca cacagtttct cttggtgata tcaggttcat
1081 tcaccaccct gctgatggag aaactaagtc ccagtgaaag ggatcatccc ttgtcaccca
1141 gcaagtccag ggcacaggca ggattagagc atccaaggca caaaaccaaa ctgtctgact
1201 gcatcattac tgttcagcca gggtctgggc aatggataga cacagtggaa agagaaaaca
1261 tgatatagaa acacaaacac aggctctgga ctcagattgg ctttgggtct catttcatgc
1321 atgagtgatg catgacatca cttgcagagg aaaaggcata aggtttgaag tcagaagacg
1381 tgcatttgag ttgctgtttc atcactgtct gtatggcttt gcacaagtca gttaagtttt
1441 ctgagcctcc agttcctcat ctccaaaata atcaaatccg ctgtagagac ctctgaaaag
1501 cttaataata tcccaaatgt gaaataactg gctccattat gtttgccaat gaggtgtctt
1561 tagcccttcc ataggcaggg ctatttggtc ccaggagctt cctgacccac atgtgaagcc
1621 tgagggagac tctgaagctt taggggacct caacaccacc ttctacccca agagatgtgg
1681 tcagaaatag accacatgac tgagaaggtt cacccagagc tccaaagact gtcaagaacg
1741 aatgatccct caggaaagga gatgcttcaa acacctgcct atctggggac acagtgtgct
1801 ctggggaggg agaagtcctg ggagagaagt cccagagtcc ttgtgccatt gactgtgcct
1861 tcctatgtta acagcagagt ccgcaaggaa cctagagtat gtttcagtgt ctccaacgaa
1921 caacactgtg tatgcttcag tcactcattc aaacagggaa acagaaatct ggacacctag
1981 agaaaatgat actatcacaa tttactccac aattaatcat tccaaagaga gtaaacccac
2041 tttttccagg gcaactgccc ttgacaatgt cgtgtaagtt gctgaaaggc ctcagaggaa
2101 ttcgggaatg acacgtcttc tgatcccatg agacagaaca aagaacagga agcttggttc
2161 ctgttgttcc tggcaacaga atttgaatat ctaggatagg atgatcacct ccagtccttc
2221 ggacttaaac ctgcctacct gagtcaaaca cctaaggata acatcatttc cagcatgtgg
2281 ttcaaataat attttccaat ccacttcagg ccaaaacatg ctaaagataa cacaccagca
2341 cattgactct ctctttgata actaagcaaa tggaattatg gttgacagag agtttatgat
2401 ccagaagaca accacttctc tccttttaga aagcagcagg attgacttat tgagaaataa
2461 tgcagtgtgt tggttacatg tgtagtctct ggagttggat gggcccatcc tgatacaagt
2521 tgagcatccc ttgtctgaaa tgcttgggat tagaaatgtt tcagatttca attttttttc
2581 agattttgga atatttgcat tatatttagc ggttgagtat ccaaatccaa aaatccaaaa
2641 ttcaaaatgc tccaataagc atttcccttg agtttcattg atgtcgatgc agtgctcaaa
2701 atctcagatt ttggagcatt ttggatattg gatttttgga tttgggatgc tcaacttgta
2761 caatgtttat tagacacatc tcctgggaca tactgcctaa ccttttggag ccttagtctc
2821 ccagactgaa aaaggaagag gatggtatta catcagctcc attgtttgag ccaagaatct
2881 aagtcatccc tgactccagt gtctttgtca ccaggccctt tggactctac ctcagaaata
2941 tttcttggac cttccacttc tcctccaact ccttgaccac catcctgtat ccaaccatca
3001 ccacctctaa cctgaatcct accttaagat cagaacagtt gtcctcactt ttgttcttgt
3061 ccctctccaa cccactctcc acaagatggc cagagtaatg tttttaatat aaattggatc
3121 cttcagtttc ctgcttaaaa ccctgcaggt ttcccaatgc actcagaaag aaatccagtt
3181 tccatggccc tggatggtct ggcccacctc cagcctcagc tagcattacc cttctgacac
3241 tctctatgta gcctccctga tcttctttca gctcctctat taaaggaaaa gttctttatg
3301 ttaattattt acatcttcct gcaggccctt cctctgcctg ctggggtcct cctattcttt
3361 aggtttaatt ttaaatatgt cacctcctaa gagaaacctt cccagaccac tctttctaaa
3421 atgaatcttc taggctgggc atggtggctc acacctgtaa tcccagtact ttgggaggcc
3481 aaggggggag atcacttgag gtcaggagtt caagaccagc ctggccaact tggtgaaacc
3541 ccgtctttac taaaaataca aaaaaattag ccaggcgtgg tggtgcaccc ctaaaatccc
3601 agctacttga gagactgagg caggagaatc gcttgaaccc aggaggtgga ggttccagtg
3661 agccaaaatc atgccaatgt attccagtct gggtgacaga gtgagactct gtctcaaaaa
3721 ataaataaat aaaataaaat gaaatagaaa aaaaaaaaaa aaaaaaaaaa aa
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