LOCUS BC085003 3100 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens vascular cell adhesion molecule 1, mRNA (cDNA clone MGC:99561 IMAGE:6375943), complete cds. ACCESSION BC085003 VERSION BC085003.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3100) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3100) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (25-OCT-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 59 Row: k Column: 23 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 18201907. FEATURES Location/Qualifiers source 1..3100 /db_xref="H-InvDB:HIT000266092" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:99561 IMAGE:6375943" /tissue_type="Eye, normal, pigmented retinal epithelium" /clone_lib="NIH_MGC_43" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..3100 /gene="VCAM1" /gene_synonym="CD106" /gene_synonym="INCAM-100" /db_xref="GeneID:7412" /db_xref="HGNC:HGNC:12663" /db_xref="MIM:192225" CDS 102..2321 /gene="VCAM1" /gene_synonym="CD106" /gene_synonym="INCAM-100" /codon_start=1 /product="vascular cell adhesion molecule 1" /protein_id="AAH85003.1" /db_xref="GeneID:7412" /db_xref="HGNC:HGNC:12663" /db_xref="MIM:192225" /translation="MPGKMVVILGASNILWIMFAASQAFKIETTPESRYLAQIGDSVS LTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESR KLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMK SQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQ VYISPKNTVISVNPSTKLQEGGSVTMTCSSEGLPAPEIFWSKKLDNGNLQHLSGNATL TLIAMRMEDSGIYVCEGVNLIGKNRKEVELIVQEKPFTVEISPGPRIAAQIGDSVMLT CSVMGCESPSFSWRTQIDSPLSGKVRSEGTNSTLTLSPVSFENEHSYLCTVTCGHKKL EKGIQVELYSFPRDPEIEMSGGLVNGSSVTVSCKVPSVYPLDRLEIELLKGETILENI EFLEDTDMKSLENKSLEMTFIPTIEDTGKALVCQAKLHIDDMEFEPKQRQSTQTLYVN VAPRDTTVLVSPSSILEEGSSVNMTCLSQGFPAPKILWSRQLPNGELQPLSENATLTL ISTKMEDSGVYLCEGINQAGRSRKEVELIIQVTPKDIKLTAFPSESVKEGDTVIISCT CGNVPETWIILKKKAETGDTVLKSIDGAYTIRKAQLKDAGVYECESKNKVGSQLRSLT LDVQGRENNKDYFSPELLVLYFASSLIIPAIGMIIYFARKANMKGSYSLVEAQKSKV" BASE COUNT 956 a 591 c 684 g 869 t ORIGIN 1 ctcactggct tcaggagctg aataccctcc caggcacaca caggtgggac acaaataagg 61 gttttggaac cactattttc tcatcacgac agcaacttaa aatgcctggg aagatggtcg 121 tgatccttgg agcctcaaat atactttgga taatgtttgc agcttctcaa gcttttaaaa 181 tcgagaccac cccagaatct agatatcttg ctcagattgg tgactccgtc tcattgactt 241 gcagcaccac aggctgtgag tccccatttt tctcttggag aacccagata gatagtccac 301 tgaatgggaa ggtgacgaat gaggggacca catctacgct gacaatgaat cctgttagtt 361 ttgggaacga acactcttac ctgtgcacag caacttgtga atctaggaaa ttggaaaaag 421 gaatccaggt ggagatctac tcttttccta aggatccaga gattcatttg agtggccctc 481 tggaggctgg gaagccgatc acagtcaagt gttcagttgc tgatgtatac ccatttgaca 541 ggctggagat agacttactg aaaggagatc atctcatgaa gagtcaggaa tttctggagg 601 atgcagacag gaagtccctg gaaaccaaga gtttggaagt aacctttact cctgtcattg 661 aggatattgg aaaagttctt gtttgccgag ctaaattaca cattgatgaa atggattctg 721 tgcccacagt aaggcaggct gtaaaagaat tgcaagtcta catatcaccc aagaatacag 781 ttatttctgt gaatccatcc acaaagctgc aagaaggtgg ctctgtgacc atgacctgtt 841 ccagcgaggg tctaccagct ccagagattt tctggagtaa gaaattagat aatgggaatc 901 tacagcacct ttctggaaat gcaactctca ccttaattgc tatgaggatg gaagattctg 961 gaatttatgt gtgtgaagga gttaatttga ttgggaaaaa cagaaaagag gtggaattaa 1021 ttgttcaaga gaaaccattt actgttgaga tctcccctgg accccggatt gctgctcaga 1081 ttggagactc agtcatgttg acatgtagtg tcatgggctg tgaatcccca tctttctcct 1141 ggagaaccca gatagacagc cctctgagcg ggaaggtgag gagtgagggg accaattcca 1201 cgctgaccct gagccctgtg agttttgaga acgaacactc ttatctgtgc acagtgactt 1261 gtggacataa gaaactggaa aagggaatcc aggtggagct ctactcattc cctagagatc 1321 cagaaatcga gatgagtggt ggcctcgtga atgggagctc tgtcactgta agctgcaagg 1381 ttcctagcgt gtaccccctt gaccggctgg agattgaatt acttaagggg gagactattc 1441 tggagaatat agagtttttg gaggatacgg atatgaaatc tctagagaac aaaagtttgg 1501 aaatgacctt catccctacc attgaagata ctggaaaagc tcttgtttgt caggctaagt 1561 tacatattga tgacatggaa ttcgaaccca aacaaaggca gagtacgcaa acactttatg 1621 tcaatgttgc ccccagagat acaaccgtct tggtcagccc ttcctccatc ctggaggaag 1681 gcagttctgt gaatatgaca tgcttgagcc agggctttcc tgctccgaaa atcctgtgga 1741 gcaggcagct ccctaacggg gagctacagc ctctttctga gaatgcaact ctcaccttaa 1801 tttctacaaa aatggaagat tctggggttt atttatgtga aggaattaac caggctggaa 1861 gaagcagaaa ggaagtggaa ttaattatcc aagttactcc aaaagacata aaacttacag 1921 cttttccttc tgagagtgtc aaagaaggag acactgtcat catctcttgt acatgtggaa 1981 atgttccaga aacatggata atcctgaaga aaaaagcgga gacaggagac acagtactaa 2041 aatctataga tggcgcctat accatccgaa aggcccagtt gaaggatgcg ggagtatatg 2101 aatgtgaatc taaaaacaaa gttggctcac aattaagaag tttaacactt gatgttcaag 2161 gaagagaaaa caacaaagac tatttttctc ctgagcttct cgtgctctat tttgcatcct 2221 ccttaataat acctgccatt ggaatgataa tttactttgc aagaaaagcc aacatgaagg 2281 ggtcatatag tcttgtagaa gcacagaaat caaaagtgta gctaatgctt gatatgttca 2341 actggagaca ctatttatct gtgcaaatcc ttgatactgc tcatcattcc ttgagaaaaa 2401 caatgagctg agaggcagac ttccctgaat gtattgaact tggaaagaaa tgcccatcta 2461 tgtcccttgc tgtgagcaag aagtcaaagt aaaacttgct gcctgaagaa cagtaactgc 2521 catcaagatg agagaactgg aggagttcct tgatctgtat atacaataac ataatttgta 2581 catatgtaaa ataaaattat gccatagcaa gattgcttaa aatagcaaca ctctatattt 2641 agattgttaa aataactagt gttgcttgga ctattataat ttaatgcatg ttaggaaaat 2701 ttcacattaa tatttgctga cagctgacct ttgtcatctt tcttctattt tattcccttt 2761 cacaaaattt tattcctata tagtttattg acaataattt caggttttgt aaagatgccg 2821 ggttttatat ttttatagac aaataataag caaagggagc actgggttga ctttcaggta 2881 ctaaatacct caacctatgg tataatggtt gactgggttt ctctgtatag tactggcatg 2941 gtacggagat gtttcacgaa gtttgttcat cagactcctg tgcaactttc ccaatgtggc 3001 ctaaaaatgc aacttctttt tattttcttt tgtaaatgtt taggtttttt tgtatagtaa 3061 agtgataatt tctggaatta gaaaaaaaaa aaaaaaaaaa //