LOCUS BC068490 3109 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens vascular cell adhesion molecule 1, mRNA (cDNA clone MGC:87170 IMAGE:30339170), complete cds. ACCESSION BC068490 VERSION BC068490.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3109) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3109) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (02-APR-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. Stefan Hansson cDNA Library Preparation: Michael Brownstein / Ted Usdin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 168 Row: k Column: 19 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 18201907. FEATURES Location/Qualifiers source 1..3109 /db_xref="H-InvDB:HIT000263047" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:87170 IMAGE:30339170" /tissue_type="Placenta, pre-eclamptic" /clone_lib="NIH_MGC_148" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3109 /gene="VCAM1" /gene_synonym="CD106" /gene_synonym="INCAM-100" /db_xref="GeneID:7412" /db_xref="HGNC:HGNC:12663" /db_xref="MIM:192225" CDS 120..2339 /gene="VCAM1" /gene_synonym="CD106" /gene_synonym="INCAM-100" /codon_start=1 /product="vascular cell adhesion molecule 1" /protein_id="AAH68490.2" /db_xref="GeneID:7412" /db_xref="HGNC:HGNC:12663" /db_xref="MIM:192225" /translation="MPGKMVVILGASNILWIMFAASQAFKIETTPESRYLAQIGDSVS LTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESR KLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMK SQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQ VYISPKNTVISVNPSTKLQEGGSVTMTCSSEGLPAPEIFWSKKLDNGNLQHLSGNATL TLIAMRMEDSGIYVCEGVNLIGKNRKEVELIVQEKPFTVEISPGPRIAAQIGDSVMLT CSVMGCESPSFSWRTQIDSPLSGKVRSEGTNSTLTLSPVSFENEHSYLCTVTCGHKKL EKGIQVELYSFPRDPEIEMSGGLVNGSSVTVSCKVPSVYPLDRLEIELLKGETILENI EFLEDTDMKSLENKSLEMTFIPTIEDTGKALVCQAKLHIDDMEFEPKQRQSTQTLYVN VAPRDTTVLVSPSSILEEGSSVNMTCLSQGFPAPKILWSRQLPNGELQPLSENATLTL ISTKMEDSGVYLCEGINQAGRSRKEVELIIQVTPKDIKLTAFPSESVKEGDTVIISCT CGNVPETWIILKKKAETGDTVLKSIDGAYTIRKAQLKDAGVYECESKNKVGSQLRSLT LDVQGRENNKDYFSPELLVLYFASSLIIPAIGMIIYFARKANMKGSYSLVEAQKSKV" BASE COUNT 952 a 596 c 690 g 871 t ORIGIN 1 gcggtatctg catcgggcct cactggcttc aggagctgaa taccctccca ggcacacaca 61 ggtgggacac aaataagggt tttggaacca ctattttctc atcacgacag caacttaaaa 121 tgcctgggaa gatggtcgtg atccttggag cctcaaatat actttggata atgtttgcag 181 cttctcaagc ttttaaaatc gagaccaccc cagaatctag atatcttgct cagattggtg 241 actccgtctc attgacttgc agcaccacag gctgtgagtc cccatttttc tcttggagaa 301 cccagataga tagtccactg aatgggaagg tgacgaatga ggggaccaca tctacgctga 361 caatgaatcc tgttagtttt gggaacgaac actcttacct gtgcacagca acttgtgaat 421 ctaggaaatt ggaaaaagga atccaggtgg agatctactc ttttcctaag gatccagaga 481 ttcatttgag tggccctctg gaggctggga agccgatcac agtcaagtgt tcagttgctg 541 atgtataccc atttgacagg ctggagatag acttactgaa aggagatcat ctcatgaaga 601 gtcaggaatt tctggaggat gcagacagga agtccctgga aaccaagagt ttggaagtaa 661 cctttactcc tgtcattgag gatattggaa aagttcttgt ttgccgagct aaattacaca 721 ttgatgaaat ggattctgtg cccacagtaa ggcaggctgt aaaagaattg caagtctaca 781 tatcacccaa gaatacagtt atttctgtga atccatccac aaagctgcaa gaaggtggct 841 ctgtgaccat gacctgttcc agcgagggtc taccagctcc agagattttc tggagtaaga 901 aattagataa tgggaatcta cagcaccttt ctggaaatgc aactctcacc ttaattgcta 961 tgaggatgga agattctgga atttatgtgt gtgaaggagt taatttgatt gggaaaaaca 1021 gaaaagaggt ggaattaatt gttcaagaga aaccatttac tgttgagatc tcccctggac 1081 cccggattgc tgctcagatt ggagactcag tcatgttgac atgtagtgtc atgggctgtg 1141 aatccccatc tttctcctgg agaacccaga tagacagccc tctgagcggg aaggtgagga 1201 gtgaggggac caattccacg ctgaccctga gccctgtgag ttttgagaac gaacactctt 1261 atctgtgcac agtgacttgt ggacataaga aactggaaaa gggaatccag gtggagctct 1321 actcattccc tagagatcca gaaatcgaga tgagtggtgg cctcgtgaat gggagctctg 1381 tcactgtaag ctgcaaggtt cctagcgtgt acccccttga ccggctggag attgaattac 1441 ttaaggggga gactattctg gagaatatag agtttttgga ggatacggat atgaaatctc 1501 tagagaacaa aagtttggaa atgaccttca tccctaccat tgaagatact ggaaaagctc 1561 ttgtttgtca ggctaagtta catattgatg acatggaatt cgaacccaaa caaaggcaga 1621 gtacgcaaac actttatgtc aatgttgccc ccagagatac aaccgtcttg gtcagccctt 1681 cctccatcct ggaggaaggc agttctgtga atatgacatg cttgagccag ggctttcctg 1741 ctccgaaaat cctgtggagc aggcagctcc ctaacgggga gctacagcct ctttctgaga 1801 atgcaactct caccttaatt tctacaaaaa tggaagattc tggggtttat ttatgtgaag 1861 gaattaacca ggctggaaga agcagaaagg aagtggaatt aattatccaa gttactccaa 1921 aagacataaa acttacagct tttccttctg agagtgtcaa agaaggagac actgtcatca 1981 tctcttgtac atgtggaaat gttccagaaa catggataat cctgaagaaa aaagcggaga 2041 caggagacac agtactaaaa tctatagatg gcgcctatac catccgaaag gcccagttga 2101 aggatgcggg agtatatgaa tgtgaatcta aaaacaaagt tggctcacaa ttaagaagtt 2161 taacacttga tgttcaagga agagaaaaca acaaagacta tttttctcct gagcttctcg 2221 tgctctattt tgcatcctcc ttaataatac ctgccattgg aatgataatt tactttgcaa 2281 gaaaagccaa catgaagggg tcatatagtc ttgtagaagc acagaaatca aaagtgtagc 2341 taatgcttga tatgttcaac tggagacact atttatctgt gcaaatcctt gatactgctc 2401 atcattcctt gagaaaaaca atgagctgag aggcagactt ccctgaatgt attgaacttg 2461 gaaagaaatg cccatctatg tcccttgctg tgagcaagaa gtcaaagtaa aacttgctgc 2521 ctgaagaaca gtaactgcca tcaagatgag agaactggag gagttccttg atctgtatat 2581 acaataacat aatttgtaca tatgtaaaat aaaattatgc catagcaaga ttgcttaaaa 2641 tagcaacact ctatatttag attgttaaaa taactagtgt tgcttggact attataattt 2701 aatgcatgtt aggaaaattt cacattaata tttgctgaca gctgaccttt gtcatctttc 2761 ttctatttta ttccctttca caaaatttta ttcctatata gtttattgac aataatttca 2821 ggttttgtaa agatgccggg ttttatattt ttatagacaa ataataagca aagggagcac 2881 tgggttgact ttcaggtact aaatacctca acctatggta taatggttga ctgggtttct 2941 ctgtatagta ctggcatggt acggagatgt ttcacgaagt ttgttcatca gactcctgtg 3001 caactttccc aatgtggcct aaaaatgcaa cttcttttta ttttcttttg taaatgttta 3061 ggtttttttg tatagtaaag tgataatttc tggaaaaaaa aaaaaaaaa //