LOCUS BC055380 2394 bp mRNA linear ROD 16-SEP-2003
DEFINITION Mus musculus lymphocyte antigen 9, mRNA (cDNA clone
IMAGE:30075933), partial cds.
ACCESSION BC055380
VERSION BC055380.1
KEYWORDS .
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2394)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2394)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (25-JUL-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Drs. Dennis Taub, Dan Longo (NIA, USA),
Jonathan Keller (NCI, USA)
cDNA Library Preparation: Yulan Piao and Minoru Ko (National
Institute on Aging, NIH: http://lgsun.grc.nia.nih.gov/cDNA/)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 112 Row: p Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6678755.
FEATURES Location/Qualifiers
source 1..2394
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6NCr"
/db_xref="taxon:10090"
/clone="IMAGE:30075933"
/tissue_type="Hematopoietic Stem Cell,
(Lin-/c-Kit-/Sca-1-), mouse, 10 wks"
/clone_lib="NIA Mouse Hematopoietic Stem Cell
(Lin-/c-Kit-/Sca-1-) cDNA Library (Long)"
/lab_host="DH10B"
/note="Vector: pSPORT1"
gene <1..2394
/gene="Ly9"
/gene_synonym="CD229"
/gene_synonym="Lgp100"
/gene_synonym="T100"
/db_xref="GeneID:17085"
/db_xref="MGI:MGI:96885"
CDS <1..1952
/gene="Ly9"
/gene_synonym="CD229"
/gene_synonym="Lgp100"
/gene_synonym="T100"
/codon_start=3
/product="Ly9 protein"
/protein_id="AAH55380.1"
/db_xref="GeneID:17085"
/db_xref="MGI:MGI:96885"
/translation="EVIRDWALGPLSENPRMSQQQIFSPILWIPLLFLLMGLGASGKE
TPPTVISGMLGGSVTFSLNISKDAEIEHIIWNCPPKALALVFYKKDITILDKGYNGRL
KVSEDGYSLYMSNLTKSDSGSYHAQINQKNVILTTNKEFTLHIYEKLQKPQIIVESVT
PSDTDSCTFTLICTVKGTKDSVQYSWTREDTHLNTYDGSHTLRVSQSVCDPDLPYTCK
AWNPVSQNSSQPVRIWQFCTGASRRKTAAGKTVVGILGEPVTLPLEFRATRATKNVVW
VFNTSVISQERRGAATADSRRKPKGSEERRVRTSDQDQSLKISQLKMEDAGPYHAYVC
SEASRDPSVRHFTLLVYKRLEKPSVTKSPVHMMNGICEVVLTCSVDGGGNNVTYTWMP
LQNKAVMSQGKSHLNVSWESGEHLPNFTCTAHNPVSNSSSQFSSGTICSGPERNKRFW
LLLLLVLLLLMLIGGYFILRKKKQCSSLATRYRQAEVPAEIPETPTGHGQFSVLSQRY
EKLDMSAKTTRHQPTPTSDTSSESSATTEEDDEKTRMHSTANSRNQVYDLVTHQDIAH
ALAYEGQVEYEAITPYDKVDGSMDEEGMAYIQVSLNVQGETPLPQKKEDSNTIYCSVQ
KPKKTAQTPQQDAESPETPTYENFT"
BASE COUNT 692 a 595 c 575 g 532 t
ORIGIN
1 aagaggtaat ccgtgactgg gctctaggtc cactctctga aaatccaaga atgagtcagc
61 agcagatatt ttctcccatt ctttggattc ctctcctctt cctactcatg gggctcggag
121 cctctggaaa ggaaacacct ccaacagtga tatcagggat gctagggggt tctgtgactt
181 tctccctaaa catctcaaag gatgcagaga ttgagcatat catctggaat tgtcccccaa
241 aggctcttgc tttagtattc tacaaaaaag atataactat tctggacaaa ggatataatg
301 gcagactcaa agtcagcgaa gatggctact ccttgtacat gagcaaccta accaaaagtg
361 attcaggatc ctaccatgct cagataaacc aaaagaatgt tatcctcacc acaaataaag
421 agttcacact gcacatctat gagaagctcc agaagcctca gatcatcgtg gaatctgtga
481 ccccatccga tactgattcc tgcaccttca ccctaatctg cactgtaaag gggacaaagg
541 acagtgtcca gtacagctgg acccgagagg acacccattt aaatacatac gatggaagcc
601 acaccctcag ggtttcccag agtgtctgtg accccgacct accctatacc tgcaaagcct
661 ggaatccagt cagtcaaaac agctcccaac ctgtccgcat ctggcaattc tgcacaggag
721 cctccagaag aaaaacagca gcggggaaga ctgtggtagg aatcctggga gagccagtga
781 ccctgccctt ggaatttcgg gccactcggg ccacaaagaa tgttgtctgg gtgtttaaca
841 cgtcggttat cagccaagaa cggagaggag cagcaacagc ggattctcgc cgtaagccca
901 aaggttctga agaacggagg gtgaggacct ctgaccagga ccaatccctg aagatcagcc
961 agctgaagat ggaggacgcg ggcccctacc atgcctatgt gtgctcagag gcctcccgag
1021 accccagtgt gagacatttc accttgcttg tctacaagag actggagaag cccagtgtca
1081 ccaagagtcc tgtgcacatg atgaacggaa tctgcgaggt tgtcctgacc tgttcagtgg
1141 acggtggtgg aaacaatgtg acatacacat ggatgcctct acaaaacaaa gctgtcatgt
1201 cccaagggaa gtcgcacctc aacgtctcct gggaaagtgg tgaacacctg cccaacttca
1261 catgcacagc ccataaccct gtcagcaaca gctccagcca gttttcttct gggaccatct
1321 gttcaggccc tgagagaaac aagaggtttt ggctcctgct cctcctggtt ttgctcttgt
1381 tgatgctcat tggcggttac ttcattttga ggaaaaagaa gcagtgttcg tctttggcca
1441 ccaggtacag acaagcggag gtcccagctg aaataccaga aaccccaact ggccatggac
1501 aattttctgt gctctcccaa cggtatgaga aactagacat gtctgctaag accaccaggc
1561 atcagcctac acccacctca gataccagct ctgagagcag cgcaacaaca gaagaggatg
1621 acgaaaagac cagaatgcac agcactgcta atagtagaaa tcaggtgtat gacttggtca
1681 cccatcagga cattgcacat gccttggcct atgaggggca agtagaatat gaagcaatca
1741 ctccatatga taaagtggat gggtctatgg atgaagaggg catggcatat atacaagtgt
1801 ccctgaatgt gcagggagag accccacttc ctcagaagaa agaagactca aatacaatct
1861 actgctctgt gcagaagcct aaaaagacgg cacaaacacc acagcaagat gctgagtctc
1921 ctgaaacccc tacctatgaa aatttcacct gaagggaaaa gcggctgcta cttccggggt
1981 gaggatttgg agaaaaacag acatcataaa tcctcctgtt tctgcagaaa gaacacatca
2041 gaatttcctg ccatggctta gactagcctg aatttgatgc cttcctcttc ttgtcatcct
2101 ccttacccca tgagcccatt cacaggtcag gcagagtctc cttggagcct acaggctttg
2161 aacaccctgc ctttggatct ctttttctta tctggactgc cttgtctgcc tcagtggggg
2221 aggatgcact tagtcctgtt gggacttgat gtgccagggt gggttggtac cgtctctgag
2281 gagaagggga gatgggaatt gggggaggga tgtgagggag ggatgggagg cctgtggtca
2341 atatgtaaag tgaataaata aactaataaa gaaaaaaata aaaaaaaaaa aaaa
//