LOCUS BC047779 1714 bp mRNA linear HUM 01-SEP-2006
DEFINITION Homo sapiens transmembrane protein 173, mRNA (cDNA clone MGC:54293
IMAGE:5762441), complete cds.
ACCESSION BC047779
VERSION BC047779.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1714)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1714)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 98 Row: g Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38093658.
FEATURES Location/Qualifiers
source 1..1714
/db_xref="H-InvDB:HIT000053254"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:54293 IMAGE:5762441"
/tissue_type="Lung, Spleen, fetal, pooled"
/clone_lib="NIH_MGC_122"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1714
/gene="TMEM173"
/gene_synonym="FLJ38577"
/db_xref="GeneID:340061"
/db_xref="HGNC:HGNC:27962"
CDS 252..1391
/gene="TMEM173"
/gene_synonym="FLJ38577"
/codon_start=1
/product="transmembrane protein 173"
/protein_id="AAH47779.1"
/db_xref="GeneID:340061"
/db_xref="HGNC:HGNC:27962"
/translation="MPHSSLHPSIPCPRGHGAQKAALVLLSACLVTLWGLGEPPEHTL
RYLVLHLASLQLGLLLNGVCSLAEELRHIHSRYRGSYWRTVRACLGCPLRRGALLLLS
IYFYYSLPNAVGPPFTWMLALLGLSQALNILLGLKGLAPAEISAVCEKGNFNVAHGLA
WSYYIGYLRLILPELQARIRTYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPN
IRFLDKLPQQTGDHAGIKDRVYSNSIYELLENGQRAGTCVLEYATPLQTLFAMSQYSQ
AGFSREDRLEQAKLFCRTLEDILADAPESQNNCRLIAYQEPADDSSFSLSQEVLRHLR
QEEKEEVTVGSLKTSAVPSTSTMSQEPELLISGMEKPLPLRTDFS"
BASE COUNT 350 a 497 c 480 g 387 t
ORIGIN
1 gcatcctggt aaccagaaga aaaatatgag acggggaatc atcgtgtgat gtgtgtgctg
61 cctttggctg agtgtgtgga gtcctgctca ggtgttaggt acagtgtgtt tgatcgtggt
121 ggcttgaggg gaacccgctg ttcagagctg tgactgcggc tgcactcaga gaagctgccc
181 ttggctgctc gtagcgccgg gccttctctc ctcgtcatca tccagagcag ccagtgtccg
241 ggaggcagaa gatgccccac tccagcctgc atccatccat cccgtgtccc aggggtcacg
301 gggcccagaa ggcagccttg gttctgctga gtgcctgcct ggtgaccctt tgggggctag
361 gagagccacc agagcacact ctccggtacc tggtgctcca cctagcctcc ctgcagctgg
421 gactgctgtt aaacggggtc tgcagcctgg ctgaggagct gcgccacatc cactccaggt
481 accggggcag ctactggagg actgtgcggg cctgcctggg ctgccccctc cgccgtgggg
541 ccctgttgct gctgtccatc tatttctact actccctccc aaatgcggtc ggcccgccct
601 tcacttggat gcttgccctc ctgggcctct cgcaggcact gaacatcctc ctgggcctca
661 agggcctggc cccagctgag atctctgcag tgtgtgaaaa agggaatttc aacgtggccc
721 atgggctggc atggtcatat tacatcggat atctgcggct gatcctgcca gagctccagg
781 cccggattcg aacttacaat cagcattaca acaacctgct acggggtgca gtgagccagc
841 ggctgtatat tctcctccca ttggactgtg gggtgcctga taacctgagt atggctgacc
901 ccaacattcg cttcctggat aaactgcccc agcagaccgg tgaccatgct ggcatcaagg
961 atcgggttta cagcaacagc atctatgagc ttctggagaa cgggcagcgg gcgggcacct
1021 gtgtcctgga gtacgccacc cccttgcaga ctttgtttgc catgtcacaa tacagtcaag
1081 ctggctttag ccgggaggat aggcttgagc aggccaaact cttctgccgg acacttgagg
1141 acatcctggc agatgcccct gagtctcaga acaactgccg cctcattgcc taccaggaac
1201 ctgcagatga cagcagcttc tcgctgtccc aggaggttct ccggcacctg cggcaggagg
1261 aaaaggaaga ggttactgtg ggcagcttga agacctcagc ggtgcccagt acctccacga
1321 tgtcccaaga gcctgagctc ctcatcagtg gaatggaaaa gcccctccct ctccgcacgg
1381 atttctcttg agacccaggg tcaccaggcc agagcctcca gtggtctcca agcctctgga
1441 ctgggggctc tcttcagtgg ctgaatgtcc agcagagcta tttccttcca cagggggcct
1501 tgcagggaag ggtccaggac ttgacatctt aagatgcgtc ttgtcccctt gggccagtca
1561 tttcccctct ctgagcctcg gtgtcttcaa cctgtgaaat gggatcataa tcactgcctt
1621 acctccctca cggttgttgt gaggactgag tgtgtggaag tttttcataa actttggatg
1681 ctagtgtaaa aaaaaaaaaa aaaaaaaaaa aaaa
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