LOCUS BC043925 1110 bp mRNA linear ROD 30-MAR-2005
DEFINITION Mus musculus histocompatibility 2, class II antigen A, alpha, mRNA
(cDNA clone MGC:49437 IMAGE:4023996), complete cds.
ACCESSION BC043925
VERSION BC043925.1
KEYWORDS MGC.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1110)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1110)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lothar Hennighausen Ph.D., Robin Humphreys
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 85 Row: f Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31981715.
FEATURES Location/Qualifiers
source 1..1110
/organism="Mus musculus"
/mol_type="mRNA"
/strain="mix FVB/N, C57BL/6J"
/db_xref="taxon:10090"
/clone="MGC:49437 IMAGE:4023996"
/tissue_type="Mammary tumor. WAP-TGF alpha model. 7 months
old, gross tissue."
/clone_lib="NCI_CGAP_Mam5"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1110
/gene="H2-Aa"
/gene_synonym="Aalpha"
/gene_synonym="IAalpha"
/db_xref="GeneID:14960"
/db_xref="MGI:MGI:95895"
CDS 35..805
/gene="H2-Aa"
/gene_synonym="Aalpha"
/gene_synonym="IAalpha"
/codon_start=1
/product="H2-Aa protein"
/protein_id="AAH43925.1"
/db_xref="GeneID:14960"
/db_xref="MGI:MGI:95895"
/translation="MPCSRALILGVLALTTMLSLCGGEDDIEADHVGVYGTTVYQSPG
DIGQYTHEFDGDEWFYVDLDKKETIWMLPEFGQLTSFDPQGGLQNIATGKYTLGILTK
RSNSTPATNEAPQATVFPKSPVLLGQPNTLICVVDNIFPPVINITWLRNSKSVTDGVY
ETSFLVNRDHSFHKLSYLTFIPSDDDIYDCKVEHWGLEEPVLKHWEPEIPAPMSELTE
TVVCALGLSVGLVGIVVGTIFIIQGLRSGGTSRHPGPL"
BASE COUNT 264 a 293 c 267 g 286 t
ORIGIN
1 ggagagcagc tgcagagacc tcccagagac caggatgccg tgcagcagag ctctgattct
61 gggggtcctc gccctgacca ccatgctcag cctctgtgga ggtgaagacg acattgaggc
121 cgaccacgta ggcgtctatg gtacaactgt atatcagtct cctggagaca ttggccagta
181 cacacatgaa tttgatggtg atgagtggtt ctatgtggac ttggataaga aggagactat
241 ctggatgctt cctgagtttg gccaattgac aagctttgac ccccaaggtg gactgcaaaa
301 catagctaca ggaaaataca ccttgggaat cttgactaag aggtcaaatt ccaccccagc
361 taccaatgag gctcctcaag cgactgtgtt ccccaagtcc cctgtgctgc tgggtcagcc
421 caacaccctt atctgcgttg tggacaacat cttccctcct gtgatcaaca tcacatggct
481 cagaaatagc aagtcagtca cagacggcgt ttatgagacc agcttccttg tcaaccgtga
541 ccattccttc cacaagctgt cttatctcac cttcatccct tctgacgatg atatttatga
601 ctgcaaggtg gagcactggg gcctggagga gccggttctg aaacactggg aacctgagat
661 tccagccccc atgtcagagc tgacagagac tgtggtgtgt gccctggggt tgtctgtggg
721 ccttgtgggc atcgtggtgg gcaccatctt catcattcaa ggcctgcgat caggtggcac
781 ctccagacac ccagggcctt tatgagtcac accctggaaa ggaaggtgtg tgtccctctt
841 catggaagaa gtggtgtgct gggtgacctg gcacagtgtg ttttctggac caatttatgg
901 tgttcttttt cttcttcaag tggcccccaa cttgcttttc ccttggccct gaggctgtcc
961 ctctcacagc tcacacaccc ttggaattct tccctgattt gaattttgtt ttctggcatc
1021 ttccaagtca catctactgc agactctctc agagaccctg atccacaaaa aacaataaaa
1081 tctcttctta tatgtaaaaa aaaaaaaaaa
//