LOCUS BC033902 4663 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens calsyntenin 1, mRNA (cDNA clone MGC:33741 IMAGE:5263192), complete cds. ACCESSION BC033902 VERSION BC033902.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4663) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4663) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 25, 2003 this sequence version replaced BC033902.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 47 Row: h Column: 20 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 57242754. FEATURES Location/Qualifiers source 1..4663 /db_xref="H-InvDB:HIT000042024" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:33741 IMAGE:5263192" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_95" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..4663 /gene="CLSTN1" /gene_synonym="alcalpha1" /gene_synonym="alcalpha2" /gene_synonym="CSTN1" /gene_synonym="KIAA0911" /gene_synonym="PIK3CD" /gene_synonym="XB31alpha" /db_xref="GeneID:22883" /db_xref="HGNC:HGNC:17447" CDS 252..3167 /gene="CLSTN1" /gene_synonym="alcalpha1" /gene_synonym="alcalpha2" /gene_synonym="CSTN1" /gene_synonym="KIAA0911" /gene_synonym="PIK3CD" /gene_synonym="XB31alpha" /codon_start=1 /product="calsyntenin 1" /protein_id="AAH33902.1" /db_xref="GeneID:22883" /db_xref="HGNC:HGNC:17447" /translation="MLRRPAPALAPAARLLLAGLLCGGGVWAARVNKHKPWLEPTYHG IVTENDNTVLLDPPLIALDKDAPLRFAGEICGFKIHGQNVPFDAVVVDKSTGEGVIRS KEKLDCELQKDYSFTIQAYDCGKGPDGTNVKKSHKATVHIQVNDVNEYAPVFKEKSYK ATVIEGKQYDSILRVEAVDADCSPQFSQICSYEIITPDVPFTVDKDGYIKNTEKLNYG KEHQYKLTVTAYDCGKKRATEDVLVKISIKPTCTPGWQGWNNRIEYEPGTGALAVFPN IHLETCDEPVASVQATVELETSHIGKGCDRDTYSEKSLHRLCGAAAGTAELLPSPSGS LNWTMGLPTDNGHDSDQVFEFNGTQAVRIPDGVVSVSPKEPFTISVWMRHGPFGRKKE TILCSSDKTDMNRHHYSLYVHGCRLIFLFRQDPSEEKKYRPAEFHWKLNQVCDEEWHH YVLNVEFPSVTLYADGTSHEPFSVTEDYPLHPSKIETQLVVGACWQEFSGVENDNETE PVTVACAGGDLHMTQFFRGNLAGLTLRSGKLADKKVIDCLYTCKEGLDLQVLEDSGRG VQIQAHRSQLVLTLEGEDLGELDKAMQHISYLNSRQFPTPGIRRLKITSTIKCFNEAT CISVPPVDGYVMVLQPEEPKISLSGVHHFARAASEFESSEGVFLFPELRIISTITREV EPEGDGAEDPTVQESLVSEEIVHDLDTCEVTVEGEELNHEQESLEVDMARLQQKGIEV SSSELGMTFTGVDTMASYEEVLHLLRYRNWHARSLLDRKFKLICSELNGRYISNEFKV EVNVIHTANPMEHANHMAAQPQFVHPEHRSFVDLSGHNLANPHPFAVVHSTATVVIVV CVSSLVFMIILGVFRIRAAHRRTMRDQDTGKENEMDWDDSALTITVNPMETYEDQHSS EEEEEEEEEEESEDGEEEDDITSAESESSEEEEGEQGDPQNATRQQQLEWDDSTLSY" BASE COUNT 1057 a 1330 c 1324 g 952 t ORIGIN 1 gagagagagc gccgccgcca tcttagttgc tgccgctgcc ttcagcaaga cgctgctctg 61 aggcggggag ggcgccgcgt cctgagcgcg cggcccagcg tcacggcggc ggcggcggcg 121 gctcctcctt ggacccccgg agctccccgc gccgcggagc agctggcccc aggcccctag 181 agccccgaga gctccgagag ctccgctcgg cgtcccgcgc gcctccctgc cgctcccgcc 241 ccgggctggc gatgctgcgc cgccccgctc ccgcgctggc cccggccgcc aggctgctgc 301 tggccgggct gctgtgcggc ggcggggtct gggccgcgcg agttaacaag cacaagccct 361 ggctggagcc cacctaccac ggcatagtca cagagaacga caacaccgtg ctcctcgacc 421 ccccactgat cgcgctggat aaagatgcgc ctctgcgatt tgcaggtgag atttgtggat 481 ttaaaattca cgggcagaat gtcccctttg atgcagtggt agtggataaa tccactggtg 541 agggagtcat tcgctccaaa gagaaactgg actgtgagct gcagaaagac tattcattca 601 ccatccaggc ctatgattgt gggaagggac ctgatggcac caacgtgaaa aagtctcata 661 aagcaactgt tcatattcag gtgaacgacg tgaatgagta cgcgcccgtg ttcaaggaga 721 agtcctacaa agccacggtc atcgagggga agcagtacga cagcattttg agggtggagg 781 ccgtggatgc cgactgctcc cctcagttca gccagatttg cagctacgaa atcatcactc 841 cagacgtgcc ctttactgtt gacaaagatg gttatataaa aaacacagag aaattaaact 901 acgggaaaga acatcaatat aagctgaccg tcactgccta tgactgtggg aagaaaagag 961 ccacagaaga tgttttggtg aagatcagca ttaagccaac ctgcacccct gggtggcaag 1021 gatggaacaa caggattgag tatgagccgg gcaccggcgc gttggccgtc tttccaaata 1081 tccacctgga gacatgtgac gagccagtcg cctcagtaca ggccacagtg gagctagaaa 1141 ccagccacat agggaaaggc tgcgaccgag acacctactc agagaagtcc ctccaccggc 1201 tctgtggtgc ggccgcgggc actgccgagc tgctgccatc cccgagtgga tccctcaact 1261 ggaccatggg cctgcccacc gacaatggcc acgacagcga ccaggtgttt gagttcaacg 1321 gcacccaggc agtgaggatc ccggatggcg tcgtgtcggt cagccccaaa gagccgttca 1381 ccatctcggt gtggatgaga catgggccat tcggcaggaa gaaggagaca attctttgca 1441 gttctgataa aacagatatg aatcggcacc actactccct ctatgtccac gggtgccggc 1501 tgatcttcct cttccgtcag gatccttctg aggagaagaa atacagacct gcagagttcc 1561 actggaagtt gaatcaggtc tgtgatgagg aatggcacca ctacgtcctc aatgtagaat 1621 tcccgagtgt gactctctat gcggatggca cgtcccacga gcccttctct gtgactgagg 1681 attacccgct ccatccatcc aagatagaaa ctcagctcgt ggtgggggct tgctggcaag 1741 agttttcagg agttgaaaat gacaatgaaa ctgagcctgt gactgtggcc tgtgcaggtg 1801 gcgacctgca catgacccag tttttccgag gcaatctggc tggcttaact ctccgttccg 1861 ggaaactcgc ggataagaag gtgatcgact gtctgtatac ctgcaaggag gggctggacc 1921 tgcaggtcct cgaagacagt ggcagaggcg tgcagatcca agcacaccgc agccagttgg 1981 tattgacctt ggagggagaa gacctcgggg aattggataa ggccatgcag cacatctcgt 2041 acctgaactc ccggcagttc cccacgcccg gaattcgcag actcaaaatc accagcacaa 2101 tcaagtgttt taacgaggcc acctgcattt cggtcccccc ggtagatggc tacgtgatgg 2161 ttttacagcc cgaggagccc aagatcagcc tgagtggcgt ccaccatttt gcccgagcag 2221 cttctgaatt tgaaagctca gaaggggtgt tccttttccc tgagcttcgc atcatcagca 2281 ccatcacgag agaagtggag cctgaagggg acggggctga ggaccccaca gttcaagaat 2341 cactggtgtc cgaggagatc gtgcacgacc tggatacctg tgaggtcacg gtggagggag 2401 aggagctgaa ccacgagcag gagagcctgg aggtggacat ggcccgcctg cagcagaagg 2461 gcattgaagt gagcagctct gaactgggca tgaccttcac aggcgtggac accatggcca 2521 gctacgagga ggttttgcac ctgctgcgct atcggaactg gcatgccagg tccttgcttg 2581 accggaagtt taagctcatc tgctcagagc tgaatggccg ctacatcagc aacgaattta 2641 aggtggaggt gaatgtaatc cacacggcca accccatgga acacgccaac cacatggctg 2701 cccagccaca gttcgtgcac ccggaacacc gctcctttgt tgacctgtca ggccacaacc 2761 tggccaaccc ccacccgttc gcagtcgtcc acagcactgc gacagttgtg atcgtggtgt 2821 gcgtcagctc cctggtgttc atgattatcc tgggggtatt tcggatccgg gccgcacatc 2881 ggcggaccat gcgggatcag gacaccggga aggagaacga gatggactgg gacgactctg 2941 ccctgaccat caccgtcaac ccgatggaga cctatgagga ccagcacagc agtgaggagg 3001 aggaggaaga ggaagaggaa gaggaaagcg aggacggcga agaagaggat gacatcacca 3061 gcgccgagtc ggagagcagc gaggaggagg agggggagca gggcgacccc cagaacgcaa 3121 cccggcagca gcagctggag tgggatgact ccaccctcag ctactgaccc gtgcccccgg 3181 ccacctcggt ttctgctttc gaagactctg ctgccatccg ttctcccagt cccaagggtc 3241 cacgatgtac aaagtcattt cggccagtag gtgtgcagac ccctacccgc cacgatcgtc 3301 gctgtgcttg gtgtgtagga ccctaggctc cccgcccacc ctctgcctgg tcgcgctctt 3361 cagtcccacg aggagctgac acgtcctctc tggccgccat ccggctcgca caggggcctc 3421 ccagcgcctc aggccccgcg tttgtgtctg gagtctcccc ccggggagag gacactggcc 3481 cctcgcactc cagaaaagcc atgccagctg ggctcgttga caaagggtaa aacatgctca 3541 ctcccacccg gtaatcattt ttttcttttt ttaaaaaaag tttttatttt ttccaaacta 3601 gtgcatgtat aaataatggc aggatggggg gtactgtgta gatgattaac tgacttttta 3661 atattttgta aataaatcgg attccttgtg tcctttgtgc tagtgtaacc cgggactgga 3721 atgtaaagtg aagttcggag ctctgagcac gggctcttcc cgccgggtcc tccctcccca 3781 gaccccagag ggagaggccc accccgccca gccccgcccc agcccctgct caggtctgag 3841 tatggctggg agtcgggggc cacaggcctc tagctgtgct gctcaagaga ctggatcagg 3901 gtagctacaa gtggccgggc cttgcctttg ggattctacc tgttcctaat ttggtgtggg 3961 gtgcggggtc cctggcccct tttccacact cctcctccga cagcagctcc ctgggcagtg 4021 gcctggtctc accgtgtgca gccttgtggt ttatgcttaa atgtacattt tcctgctggt 4081 aaaaggagaa actgagaggt gtcctgcaga ccggctgacc actccttttg gagacggcag 4141 gaggcctgag cgatccgtac tcagaacgtc caggagagac gcatggcccg aagtcaaagt 4201 gctggaattt tccaaaacag cctgttctct cctctctcct ccccagagca ccccctgcca 4261 tcaggggggc tgaaatccct ctcccccagg agccctgctg ctttgcttgg tggtagggca 4321 ggagagcaaa caaacagtca tggtctaaaa cccacatagc actttgctct tagttacatg 4381 taaaatttta gatttctaaa acaggtgggc aatcattttg aatactgttc tgtgaccctg 4441 actgctagtt ctgaggacac tggtggctgt gctatgtgtg gccatcctcc atgtcccgtc 4501 cctgtagctg ctctgtttag acagcggaca gacgctcacg cccaggggat gtcctcacgc 4561 tgtcgccgcg cggtttccct tcgcagatgt gtatactcat gataggtaag aaagtgtatc 4621 cgctacaata aagttctggt tctaaccaaa aaaaaaaaaa aaa //