LOCUS BC031010 1568 bp mRNA linear HUM 07-OCT-2003
DEFINITION Homo sapiens SET and MYND domain containing 3, mRNA (cDNA clone
MGC:32757 IMAGE:4334047), complete cds.
ACCESSION BC031010
VERSION BC031010.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1568)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1568)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (03-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 41 Row: d Column: 8.
FEATURES Location/Qualifiers
source 1..1568
/db_xref="H-InvDB:HIT000041201"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:32757 IMAGE:4334047"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_62"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1568
/gene="SMYD3"
/gene_synonym="FLJ21080"
/gene_synonym="ZMYND1"
/gene_synonym="ZNFN3A1"
/db_xref="GeneID:64754"
CDS 41..1327
/gene="SMYD3"
/gene_synonym="FLJ21080"
/gene_synonym="ZMYND1"
/gene_synonym="ZNFN3A1"
/codon_start=1
/product="SMYD3 protein"
/protein_id="AAH31010.1"
/db_xref="GeneID:64754"
/translation="MEPLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGS
RGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSV
RLLGRVVFKLMDGAPSESEKLYSFYDLESNINKLTEDRKEGLRQLVMTFQHFMREEIQ
DASQLPPAFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNG
PHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADML
TGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCA
MDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKN
LRLAFDIMRVTHGREHSLIEDLILLLEECDANIRAS"
misc_feature 185..301
/gene="SMYD3"
/gene_synonym="FLJ21080"
/gene_synonym="ZMYND1"
/gene_synonym="ZNFN3A1"
/note="zf-MYND; Region: MYND finger"
/db_xref="CDD:pfam01753"
misc_feature 482..757
/gene="SMYD3"
/gene_synonym="FLJ21080"
/gene_synonym="ZMYND1"
/gene_synonym="ZNFN3A1"
/note="SET; Region: SET (Su(var)3-9, Enhancer-of-zeste,
Trithorax) domain"
/db_xref="CDD:smart00317"
BASE COUNT 440 a 352 c 408 g 368 t
ORIGIN
1 ggacgcgggt agccgtctga ggtgccggag ctgcgggagg atggagccgc tgaaggtgga
61 aaagttcgca accgccaaca ggggaaacgg gctgcgcgcc gtgaccccgc tgcgccccgg
121 agagctactc ttccgctcgg atcccttggc gtacacggtg tgcaagggga gtcgtggcgt
181 cgtctgcgac cgctgccttc tcgggaagga aaagctgatg cgatgctctc agtgccgcgt
241 cgccaaatac tgtagtgcta agtgtcagaa aaaagcttgg ccagaccaca agcgggaatg
301 caaatgcctt aaaagctgca aacccagata tcctccagac tccgttcgac ttcttggcag
361 agttgtcttc aaacttatgg atggagcacc ttcagaatca gagaagcttt actcatttta
421 tgatctggag tcaaatatta acaaactgac tgaagatagg aaagagggcc tcaggcaact
481 cgtaatgaca tttcaacatt tcatgagaga agaaatacag gatgcctctc agctgccacc
541 tgcctttgac ctttttgaag cctttgcaaa agtgatctgc aactctttca ccatctgtaa
601 tgcggagatg caggaagttg gtgttggcct atatcccagt atctctttgc tcaatcacag
661 ctgtgacccc aactgttcga ttgtgttcaa tgggccccac ctcttactgc gagcagtccg
721 agacatcgag gtgggagagg agctcaccat ctgctacctg gatatgctga tgaccagtga
781 ggagcgccgg aagcagctga gggaccagta ctgctttgaa tgtgactgtt tccgttgcca
841 aacccaggac aaggatgctg atatgctaac tggtgatgag caagtatgga aggaagttca
901 agaatccctg aaaaaaattg aagaactgaa ggcacactgg aagtgggagc aggttctggc
961 catgtgccag gcgatcataa gcagcaattc tgaacggctt cccgatatca acatctacca
1021 gctgaaggtg ctcgactgcg ccatggatgc ctgcatcaac ctcggcctgt tggaggaagc
1081 cttgttctat ggtactcgga ccatggagcc atacaggatt tttttcccag gaagccatcc
1141 cgtcagaggg gttcaagtga tgaaagttgg caaactgcag ctacatcaag gcatgtttcc
1201 ccaagcaatg aagaatctga gactggcttt tgatattatg agagtgacac atggcagaga
1261 acacagcctg attgaagatt tgattctact tttagaagaa tgcgacgcca acatcagagc
1321 atcctaaggg aacgcagtca gagggaaata cggcgtgtgt ctttgttgaa tgccttattg
1381 aggtcacaca ctctatgctt tgttagctgt gtgaacctct cctattggaa attctgttcc
1441 gtgtttgtgt aggtaaataa aggcagacat ggtttgcaaa ccacaagaat cattagttgt
1501 agagaagcac gattataata aattcaaaac atttggttga gaaaaaaaaa aaaaaaaaaa
1561 aaaaaaaa
//