LOCUS BC030031 1508 bp mRNA linear ROD 16-AUG-2004
DEFINITION Mus musculus SLAM family member 6, mRNA (cDNA clone MGC:41003
IMAGE:1225313), complete cds.
ACCESSION BC030031
VERSION BC030031.1
KEYWORDS MGC.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1508)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1508)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (06-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Marcello Bento Soares, Ph.D.
cDNA Library Preparation: M. Bento Soares, University of Iowa
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 66 Row: d Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13507653.
FEATURES Location/Qualifiers
source 1..1508
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6J"
/db_xref="taxon:10090"
/clone="MGC:41003 IMAGE:1225313"
/tissue_type="Thymus gland, mouse"
/clone_lib="Soares_thymus_2NbMT"
/lab_host="DH10B"
/note="Vector: pT7T3-Pac"
gene 1..1508
/gene="Slamf6"
/gene_synonym="KAL1"
/gene_synonym="KAL1b"
/gene_synonym="NTB-A"
/gene_synonym="NTBA"
/gene_synonym="SF2000"
/db_xref="GeneID:30925"
/db_xref="MGI:MGI:1353620"
CDS 153..1208
/gene="Slamf6"
/gene_synonym="KAL1"
/gene_synonym="KAL1b"
/gene_synonym="NTB-A"
/gene_synonym="NTBA"
/gene_synonym="SF2000"
/codon_start=1
/product="Slamf6 protein"
/protein_id="AAH30031.1"
/db_xref="GeneID:30925"
/db_xref="MGI:MGI:1353620"
/translation="MAVSRAPAPDSACQRMVWLFPLVFCLGSGSEVSQSSSDPQLMNG
VLGESAVLPLKLPAGKIANIIIWNYEWEASQVTALVINLSNPESPQIMNTDVKKRLNI
TQSYSLQISNLTMADTGSYTAQITTKDSEVITFKYILRVFERLGNLETTNYTLLLENG
TCQIHLACVLKNQSQTVSVEWQATGNISLGGPNVTIFWDPRNSGDQTYVCRAKNAVSN
LSVSVSTQSLCKGVLTNPPWNAVWFMTTISIISAVILIFVCWSIHVWKRRGSLPLTSQ
HPESSQSTDGPGSPGNTVYAQVTRPMQEMKIPKPIKNDSMTIYSIVNHSREETVALTG
YNQPITLKVNTLINYNS"
BASE COUNT 482 a 342 c 321 g 363 t
ORIGIN
1 cacgttccct actgctaaga gtcttagctt acaaaagata ttcttgtaag ccaagtgtga
61 agttaatcac gacaaccaaa ggtttgctaa catagaggaa gagctctcat caatagggga
121 acagaaagtc tcagcgacaa gcttatgaaa gaatggctgt ctcaagggct ccagcacccg
181 actccgcctg tcagaggatg gtctggctct ttccacttgt cttctgcctc ggctcaggga
241 gtgaagtttc acagagcagc tcagaccccc agctaatgaa tggcgttcta ggagagtctg
301 cagttcttcc tctaaagctt cctgcaggga agatagccaa tatcatcatc tggaattatg
361 aatgggaagc gtcacaagtc actgccctcg ttatcaacct aagtaatcct gaaagtccac
421 aaatcatgaa cactgatgta aagaagagac tgaacatcac ccagtcctac tccctgcaaa
481 tcagcaacct taccatggca gacacaggat catacactgc gcagataacc acaaaggact
541 ctgaagtgat caccttcaaa tatattctga gggtctttga acgactgggt aacttagaaa
601 ctaccaacta tactctcctg ctagagaatg ggacctgcca gatacacctg gcctgtgttt
661 tgaagaatca aagtcaaact gtctcagttg agtggcaagc cacaggaaac atctctttag
721 gaggaccaaa tgtcactatc ttttgggacc cgaggaattc tggtgaccag acttacgtct
781 gcagagccaa gaatgctgtc agcaatttgt cagtctctgt ttcgacccag agtctctgca
841 aaggggttct aactaatcca ccctggaatg cagtatggtt tatgactaca atttcaataa
901 tcagtgctgt catactcatc tttgtgtgct ggagcataca tgtttggaag agaagaggtt
961 ctcttccttt gactagccaa catccagagt cctcccagag cacagatggc ccaggctctc
1021 cagggaacac tgtgtatgca caagtcactc gtccaatgca ggaaatgaaa atcccaaaac
1081 ctatcaaaaa tgactccatg acaatttact ccatagttaa tcattccaga gaggaaacag
1141 tggctttaac cggctataac caacccatta ccctgaaggt taacacttta atcaactata
1201 actcctgaag gaagagcact gcagtgactt gaggaaatta aacaatgctg tcaccacagc
1261 tctggcttag attaatgaag tcagcatctc tggagattga gcgctgccat ttgcattgtt
1321 caaacgcttt ctaggtggta tggtgagatg ccagagggct aagggccatt atagcagggt
1381 agtttgacta ggaatacata agatagaaag cctagaatca tatcattgaa agggacaatg
1441 gacctaagag aagtggaata aaattgtgtc acgctgaaaa aaaaaaaaaa aaaaaaaaaa
1501 aaaaaaaa
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