LOCUS BC025105 1423 bp mRNA linear ROD 15-JUL-2006
DEFINITION Mus musculus V-set and immunoglobulin domain containing 4, mRNA
(cDNA clone MGC:36211 IMAGE:4162875), complete cds.
ACCESSION BC025105
VERSION BC025105.1
KEYWORDS MGC.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1423)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1423)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Jeffrey E. Green, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 61 Row: i Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31343017.
FEATURES Location/Qualifiers
source 1..1423
/organism="Mus musculus"
/mol_type="mRNA"
/strain="FVB/N"
/db_xref="taxon:10090"
/clone="MGC:36211 IMAGE:4162875"
/tissue_type="Liver, normal. 5 month old male mouse."
/clone_lib="NCI_CGAP_Li9"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1423
/gene="Vsig4"
/gene_synonym="A530061A11"
/gene_synonym="MGC36211"
/gene_synonym="Z39IG"
/db_xref="GeneID:278180"
/db_xref="MGI:MGI:2679720"
CDS 47..889
/gene="Vsig4"
/gene_synonym="A530061A11"
/gene_synonym="MGC36211"
/gene_synonym="Z39IG"
/codon_start=1
/product="V-set and immunoglobulin domain containing 4"
/protein_id="AAH25105.1"
/db_xref="GeneID:278180"
/db_xref="MGI:MGI:2679720"
/translation="MEISSGLLFLGHLIVLTYGHPTLKTPESVTGTWKGDVKIQCIYD
PLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGDVSLQINT
LQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRVRKYNPPRINTEAPTTLHSSLEATTI
MSSTSDLTTNGTGKLEETIAGSGRNLPIFAIIFIISLCCIVAVTIPYILFRCRTFQQE
YVYGVSRVFARKTSNSEETTRVTTIATDEPDSQALISDYSDDPCLSQEYQITIRSTMS
IPAC"
BASE COUNT 428 a 343 c 283 g 369 t
ORIGIN
1 cagcagcaag aggatggaag gatgaataga agtagcttca aataggatgg agatctcatc
61 aggcttgctg ttcctgggcc acctaatagt gctcacctat ggccacccca ccctaaaaac
121 acctgagagt gtgacaggga cctggaaagg agatgtgaag attcagtgca tctatgatcc
181 cctgagaggc tacaggcaag ttttggtgaa atggctggta agacacggct ctgactccgt
241 caccatcttc ctacgtgact ccactggaga ccatatccag caggcaaagt acagaggccg
301 cctgaaagtg agccacaaag ttccaggaga tgtgtccctc caaataaata ccctgcagat
361 ggatgacagg aatcactata catgtgaggt cacctggcag actcctgatg gaaaccaagt
421 aataagagat aagatcattg agctccgtgt tcggaaatat aatccaccta gaatcaatac
481 tgaagcacct acaaccctgc actcctcttt ggaagcaaca actataatga gttcaacctc
541 tgacttgacc actaatggga ctggaaaact tgaggagacc attgctggtt cagggaggaa
601 cctgccaatc tttgccataa tcttcatcat ctccctttgc tgcatagtag ctgtcaccat
661 accttatatc ttgttccgct gcaggacatt ccaacaagag tatgtctatg gagtgagcag
721 ggtgtttgcc aggaagacaa gcaactctga agaaaccaca agggtgacta ccatcgcaac
781 tgatgaacca gattcccagg ctctgattag tgactactct gatgatcctt gcctcagcca
841 ggagtaccaa ataaccatca gatcaacaat gtctattcct gcctgctgaa cacagtttcc
901 agaaactaag aagttcttgc tactgaagaa aataacatct gctaaaatgc ccctactaag
961 tcaaggtcta ctggcgtaat tacctgttac ttatttacta cttgccttca acatagcttt
1021 ctccctggct tcctttcttc ttagacaacc taaagtatct atctagtctg ccaattctgg
1081 ggccattgag aaatcctggg tttggctaag aatatactac atgcacctca agaaatctag
1141 cttctgggct tcacccagaa caattttctt cctagggcct tcacaactct tctccaaaca
1201 gcagagaaat tccatagcag tagaggttct ttatcatgcc tccagacagc gtgagtctca
1261 gtcctacaaa ctcagacaag cacatgggtc taggattact cctctttctc tagggccaga
1321 tgacttttaa ttgatattac tattgctaca ttatgaatct aatgcacatg tattcttttg
1381 ttgttaataa atgtttaatc atgacatcaa aaaaaaaaaa aaa
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