LOCUS BC020063 3278 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens CD84 molecule, mRNA (cDNA clone MGC:21324
IMAGE:4385965), complete cds.
ACCESSION BC020063
VERSION BC020063.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3278)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3278)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: o Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4502686.
FEATURES Location/Qualifiers
source 1..3278
/db_xref="H-InvDB:HIT000038728"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21324 IMAGE:4385965"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3278
/gene="CD84"
/gene_synonym="hCD84"
/gene_synonym="LY9B"
/gene_synonym="mCD84"
/gene_synonym="SLAMF5"
/db_xref="GeneID:8832"
/db_xref="HGNC:HGNC:1704"
/db_xref="MIM:604513"
CDS 25..1011
/gene="CD84"
/gene_synonym="hCD84"
/gene_synonym="LY9B"
/gene_synonym="mCD84"
/gene_synonym="SLAMF5"
/codon_start=1
/product="CD84 molecule"
/protein_id="AAH20063.1"
/db_xref="GeneID:8832"
/db_xref="HGNC:HGNC:1704"
/db_xref="MIM:604513"
/translation="MAQHHLWILLLCLQTWPEAAGKDSEIFTVNGILGESVTFPVNIQ
EPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVISDLRME
DAGDYKADINTQADPYTTTKRYNLQIYRRLGKPKITQSLMASVNSTCNVTLTCSVEKE
EKNVTYNWSPLGEEGNVLQIFQTPEDQELTYTCTAQNPVSNNSDSISARQLCADIAMG
FRTHHTGLLSVLAMFFLLVLILSSVFLFRLFKRRQDAASKKTIYTYIMASRNTQPAES
RIYDEILQSKVLPSKEEPVNTVYSEVQFADKMGKASTQDSKPPGTSSYEIVI"
BASE COUNT 954 a 792 c 746 g 786 t
ORIGIN
1 acagaaggtt agaccctgaa agagatggct cagcaccacc tatggatctt gctcctttgc
61 ctgcaaacct ggccggaagc agctggaaaa gactcagaaa tcttcacagt gaatgggatt
121 ctgggagagt cagtcacttt ccctgtaaat atccaagaac cacggcaagt taaaatcatt
181 gcttggactt ctaaaacatc tgttgcttat gtaacaccag gagactcaga aacagcaccc
241 gtagttactg tgacccacag aaattattat gaacggatac atgccttagg tccgaactac
301 aatctggtca ttagcgatct gaggatggaa gacgcaggag actacaaagc agacataaat
361 acacaggctg atccctacac caccaccaag cgctacaacc tgcaaatcta tcgtcggctt
421 gggaaaccaa aaattacaca gagtttaatg gcatctgtga acagcacctg taatgtcaca
481 ctgacatgct ctgtagagaa agaagaaaag aatgtgacat acaattggag tcccctggga
541 gaagagggta atgtccttca aatcttccag actcctgagg accaagagct gacttacacg
601 tgtacagccc agaaccctgt cagcaacaat tctgactcca tctctgcccg gcagctctgt
661 gcagacatcg caatgggctt ccgtactcac cacaccgggt tgctgagcgt gctggctatg
721 ttctttctgc ttgttctcat tctgtcttca gtgtttttgt tccgtttgtt caagagaaga
781 caagatgctg cctcaaagaa aaccatatac acatatatca tggcttcaag gaacacccag
841 ccagcagagt ccagaatcta tgatgaaatc ctgcagtcca aggtgcttcc ctccaaggaa
901 gagccagtga acacagttta ttccgaagtg cagtttgctg ataagatggg gaaagccagc
961 acacaggaca gtaaacctcc tgggacttca agctatgaaa ttgtgatcta ggctgctggg
1021 ctgaattctc cctctggaaa ctgagttaca accaccaata ctggcaggtt ccctggatcc
1081 agatcttctc tgcccaactc ttactgggag attgcaaact gccacatctc agcctgtaag
1141 caaagcagga aaccttctgc tgggcatagc ttgtgcctaa atggacaaat ggatgcatac
1201 ccttcctgaa atgactccct tctgaatgaa tgacaaagca ggttacctag tatagttttc
1261 ccaaacttct tcccatcata gcacatgtag aaaataatat ttttatggca cactgggata
1321 aacaagcaag attgctcact tctggaagct gcatatgact agaggcctct tgtgactgga
1381 ggtaacaacc ctgcccagta actgtgggag aaggggatca atattttgca cacctgtaat
1441 aggccatggc acaccagcca agatgctctg ctcacagtca gtatgtgtga agatccctgg
1501 tgcgtggcct tcaccacgca tcttgagcaa attaggaaaa tgtacccttc gcttgaggca
1561 gatgcagccc ttcccccgag tgcatggctt ggagagcaga atgtgggctg catataagca
1621 cactcatccc tttgtctggg aatctttgtg cagggcataa caggcttagt aagtccaaac
1681 acagatgaca gtgctgtgtg ggtctctgtc agagttgtgg ctctcagcca tgtagacaca
1741 ctctccaaat ggagtgttgg aaaatgttct ttctgcaggg tctagagact gctgggacac
1801 ttttcttgga gtgctacttc agaagcctta taggattttc tttctggcca agatttcctt
1861 ctgtatcact ccaagcagcc tcagcagaag aagcagccat gcccagtatt cccactctcc
1921 aaaaggaact gaccagctta tatttctcac acttctgggg aactgggtat aatccaacca
1981 tcaaaataga agaccttgca agaagcagag tcattctcca gaaggaactt gggagatgat
2041 ggtgcagatg atgaaactgg gttcatccca gttccaaaga ctcagagaac tagagtttaa
2101 gctgaggcag agtgccgcca ccctggcatg ccccacaaac agatcaccag ccagcttaca
2161 caggcattaa ctctcctcaa tgaggaagaa tcattcacaa ctgagcaaga cattcatatg
2221 atcatttaag gaagtgtttc ccttatgtgt tagcaagtat aatcggctaa ctcctaaatc
2281 ccaatgaata gtcctaggct ggacagcaat gggctgcaat taggcagata aagacatcag
2341 tcccagtaaa tgaatccata gactcatcta gcaccaacta ccattagcac tatgttagga
2401 gctgcaaggc cccaaagtag aagatgtgca taatgtctgc tcttgtgtag ctcaggagac
2461 aattccagca cagacactac agttaacgct gaactgcagc tgcaagtaat agcatgaaca
2521 gtcagaaaaa taccttatga gggggcaggg ctgaagctgg gccttgaagg atggatgaaa
2581 tttggataga gaatgaggaa gacagagggc ctccaagtga gagaagcatg aaaaatgagc
2641 aggggcctgg atcagtgggg tgtattcaga gcacctctcc agatgcacca tgcatgctca
2701 cagtcccttg cctatgtgtg gcagagtgtc ccagccagat gtgtgccctc accccatgtc
2761 catttacatg tccttcaatg cccacctcaa aaggtacctc ttctgtaaag ctttccctgg
2821 tatcaggaat caaaattaat cagggatctt ttcacactgc tgttttttcc tctttggtcc
2881 ttctatcact aaaactcatc tcattcagcc ttacagcata actaattatt tgttttcctc
2941 actacattgt acatgtggga attacagata aacggaagcc ggctggggtg gtggctcacg
3001 cctgtaatcc caacactttg ggaggccaag gcaggcggat cacctgaggt caggagttcg
3061 agattagtct ggccaacatg gtgaaacccc atctctacta aaaatacgaa attagccagg
3121 tgtggtggca cacatctgta gtcccagcta ctctggaggc tgagacagga gaatcgcttg
3181 aacccaggaa gtggaggttg cagtgagctg agatcacacc actgcactcc agcctgggag
3241 agacagagtg agactccatc tcgaaaaaaa aaaaaaaa
//