LOCUS BC019721 1084 bp mRNA linear ROD 15-JUL-2006
DEFINITION Mus musculus histocompatibility 2, class II antigen A, alpha, mRNA
(cDNA clone MGC:30249 IMAGE:3669693), complete cds.
ACCESSION BC019721
VERSION BC019721.1
KEYWORDS MGC.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1084)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1084)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lothar Hennighausen Ph.D., Robin Humphreys
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 40 Row: d Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31981715.
FEATURES Location/Qualifiers
source 1..1084
/organism="Mus musculus"
/mol_type="mRNA"
/strain="mix FVB/N, C57BL/6J"
/db_xref="taxon:10090"
/clone="MGC:30249 IMAGE:3669693"
/tissue_type="Mammary tumor. WAP-TGF alpha model. 7 months
old, gross tissue."
/clone_lib="NCI_CGAP_Mam5"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1084
/gene="H2-Aa"
/gene_synonym="Aalpha"
/gene_synonym="IAalpha"
/db_xref="GeneID:14960"
/db_xref="MGI:MGI:95895"
CDS 6..776
/gene="H2-Aa"
/gene_synonym="Aalpha"
/gene_synonym="IAalpha"
/codon_start=1
/product="histocompatibility 2, class II antigen A, alpha"
/protein_id="AAH19721.1"
/db_xref="GeneID:14960"
/db_xref="MGI:MGI:95895"
/translation="MPRSRALILGVLALTTMLSLCGGEDDIEADHVGTYGISVYQSPG
DIGQYTFEFDGDELFYVDLDKKETVWMLPEFGQLASFDPQGGLQNIAVVKHNLGVLTK
RSNSTPATNEAPQATVFPKSPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVY
ETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHWGLEEPVLKHWEPEIPAPMSELTE
TVVCALGLSVGLVGIVVGTIFIIQGLRSGGTSRHPGPL"
BASE COUNT 252 a 288 c 256 g 288 t
ORIGIN
1 ccaggatgcc gcgcagcaga gctctgattc tgggggtcct cgccctgacc accatgctca
61 gcctctgtgg aggtgaagac gacattgagg ccgaccacgt aggcacctat ggtataagtg
121 tatatcagtc tcctggagac attggccagt acacatttga atttgatggt gatgagttgt
181 tctatgtgga cttggataag aaggagactg tctggatgct tcctgagttt ggccaattgg
241 caagctttga cccccaaggt ggactgcaaa acatagctgt agtaaaacac aacttgggag
301 tcttgactaa gaggtcaaat tccaccccag ctaccaatga ggctcctcaa gcgactgtgt
361 tccccaagtc ccctgtgctg ctgggtcagc ccaacaccct catctgcttt gtggacaaca
421 tcttccctcc tgtgatcaac atcacatggc tcagaaatag caagtcagtc gcagacggtg
481 tttatgagac cagcttcttc gtcaaccgtg actattcctt ccacaagctg tcttatctca
541 ccttcatccc ttctgacgat gacatttatg actgcaaggt ggaacactgg ggcctggagg
601 agccggttct gaaacactgg gaacctgaga ttccagcccc catgtcagag ctgacagaga
661 ctgtggtctg tgccctgggg ttgtctgtgg gccttgtggg catcgtggtg ggcaccatct
721 tcatcattca aggcctgcga tcaggtggca cctccagaca cccagggcct ttatgagtca
781 caccctggaa aggaaggcgt gtgtccctct tcagggaaga agtggtgtgc tgggtgacct
841 ggcacagtgt gttttctgga ccaattcatg gtgttctttc tcttcttcaa gtgaccccca
901 acttgctttt ctcttgaccc tgaggctgtc cctctcacag ctcacacacc cttggaattc
961 ttccctgatc tgaattttgt tttctgtcat cttccaagtt acatctactg cagactctct
1021 cagagaccct gatccacaaa accaataaaa tctcttctta tatgttgtca aaaaaaaaaa
1081 aaaa
//