LOCUS BC008152 1533 bp mRNA linear ROD 15-JUL-2006
DEFINITION Mus musculus caspase 1, mRNA (cDNA clone MGC:6106 IMAGE:3583883),
complete cds.
ACCESSION BC008152
VERSION BC008152.1
KEYWORDS MGC.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1533)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1533)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Gilbert Smith, Ph.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 10 Row: e Column: 13.
FEATURES Location/Qualifiers
source 1..1533
/organism="Mus musculus"
/mol_type="mRNA"
/strain="FVB/N"
/db_xref="taxon:10090"
/clone="MGC:6106 IMAGE:3583883"
/tissue_type="Mammary tumor. Metallothionien-TGF alpha
model. 10 month old virgin mouse. Taken by biopsy."
/clone_lib="NCI_CGAP_Mam1"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1533
/gene="Casp1"
/gene_synonym="ICE"
/db_xref="GeneID:12362"
/db_xref="MGI:MGI:96544"
CDS 201..1409
/gene="Casp1"
/gene_synonym="ICE"
/codon_start=1
/product="caspase 1"
/protein_id="AAH08152.1"
/db_xref="GeneID:12362"
/db_xref="MGI:MGI:96544"
/translation="MADKILRAKRKQFINSVSIGTINGLLDELLEKRVLNQEEMDKIK
LANITAMDKARDLCDHVSKKGPQASQIFITYICNEDCYLAGILELQSAPSAETFVATE
DSKGGHPSSSETKEEQNKEDGTFPGLTGTLKFCPLEKAQKLWKENPSEIYPIMNTTTR
TRLALIICNTEFQHLSPRVGAQVDLREMKLLLEDLGYTVKVKENLTALEMVKEVKEFA
ACPEHKTSDSTFLVFMSHGIQEGICGTTYSNEVSDILKVDTIFQMMNTLKCPSLKDKP
KVIIIQACRGEKQGVVLLKDSVRDSEEDFLTDAIFEDDGIKKAHIEKDFIAFCSSTPD
NVSWRHPVRGSLFIESLIKHMKEYAWSCDLEDIFRKVRFSFEQPEFRLQMPTADRVTL
TKRFYLFPGH"
BASE COUNT 516 a 291 c 327 g 399 t
ORIGIN
1 cttccaagtg ttgaagaaga atcatttccg cggttgaatc cttttcagac ttgagcattt
61 aaacctaact ttaattaggg aaagaaacat gcgcacacag caattgtggt tatttctcaa
121 tctgtattca cgccctgttg gaaaggaact aacaatatgc tttcagtttc agtagctctg
181 cggtgtagaa aagaaacgcc atggctgaca agatcctgag ggcaaagagg aagcaattta
241 tcaactcagt gagtataggg acaataaatg gattgttgga tgaactttta gagaagagag
301 tgctgaatca ggaagaaatg gataaaataa aacttgcaaa cattactgct atggacaagg
361 cacgggacct atgtgatcat gtctctaaaa aagggcccca ggcaagccaa atctttatca
421 cttacatttg taatgaagac tgctacctgg caggaattct ggagcttcaa tcagctccat
481 cagctgaaac atttgttgct acagaagatt ctaaaggagg acatccttca tcctcagaaa
541 caaaggaaga acagaacaaa gaagatggca catttccagg actgactggg accctcaagt
601 tttgcccttt agaaaaagcc cagaagttat ggaaagaaaa tccttcagag atttatccaa
661 taatgaatac aaccactcgt acacgtcttg ccctcattat ctgcaacaca gagtttcaac
721 atctttctcc gagggttgga gctcaagttg acctcagaga aatgaagttg ctgctggagg
781 atctggggta taccgtgaaa gtgaaagaaa atctcacagc tctggagatg gtgaaagagg
841 tgaaagaatt tgctgcctgc ccagagcaca agacttctga cagtactttc cttgtattca
901 tgtctcatgg tatccaggag ggaatatgtg ggaccacata ctctaatgaa gtttcagata
961 ttttaaaggt tgacacaatc tttcagatga tgaacacttt gaagtgccca agcttgaaag
1021 acaagcccaa ggtgatcatt attcaggcat gccgtggaga gaaacaagga gtggtgttgt
1081 taaaagattc agtaagagac tctgaagagg atttcttaac ggatgcaatt tttgaagatg
1141 atggcattaa gaaggcccat atagagaaag attttattgc tttctgctct tcaacaccag
1201 ataatgtgtc ttggagacat cctgtcaggg gctcactttt cattgagtca ctcatcaaac
1261 acatgaaaga atatgcctgg tcttgtgact tggaggacat tttcagaaag gttcgatttt
1321 catttgaaca accagaattt aggctacaga tgcccactgc tgatagggtg accctgacaa
1381 aacgtttcta cctcttcccg ggacattaaa cgaagaatcc agttcattct tatgtaccta
1441 tgctgagaat cgtgccaata agaagccaat acttccttag atgatgcaat aaatattaaa
1501 ataaaacaaa acaaaaaaaa aaaaaaaaaa aaa
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