LOCUS AY568055 10459 bp DNA circular SYN 21-NOV-2011 DEFINITION Cloning vector pAGRIKOLA, complete sequence. ACCESSION AY568055 VERSION AY568055.1 KEYWORDS . SOURCE Cloning vector pAGRIKOLA ORGANISM Cloning vector pAGRIKOLA other sequences; artificial sequences; vectors. REFERENCE 1 (bases 1 to 10459) AUTHORS Hilson,P., Allemeersch,J., Altmann,T., Aubourg,S., Avon,A., Beynon,J., Bhalerao,R.P., Bitton,F., Caboche,M., Cannoot,B., Chardakov,V., Cognet-Holliger,C., Colot,V., Crowe,M., Darimont,C., Durinck,S., Eickhoff,H., de Longevialle,A.F., Farmer,E.E., Grant,M., Kuiper,M.T., Lehrach,H., Leon,C., Leyva,A., Lundeberg,J., Lurin,C., Moreau,Y., Nietfeld,W., Paz-Ares,J., Reymond,P., Rouze,P., Sandberg,G., Segura,M.D., Serizet,C., Tabrett,A., Taconnat,L., Thareau,V., Van Hummelen,P., Vercruysse,S., Vuylsteke,M., Weingartner,M., Weisbeek,P.J., Wirta,V., Wittink,F.R., Zabeau,M. and Small,I. TITLE Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications JOURNAL Genome Res. 14 (10B), 2176-2189 (2004) PUBMED 15489341 REFERENCE 2 (bases 1 to 10459) AUTHORS Small,I.D. and Hilson,P. TITLE pAGRIKOLA sequence JOURNAL Unpublished REFERENCE 3 (bases 1 to 10459) AUTHORS Small,I.D. and Hilson,P. TITLE Direct Submission JOURNAL Submitted (07-MAR-2004) URGV, INRA/CNRS/UEVE, 2, rue Gaston Cremieux, CP5708, Evry, Essonne 91057, France FEATURES Location/Qualifiers source 1..10459 /organism="Cloning vector pAGRIKOLA" /mol_type="other DNA" /db_xref="taxon:267887" /lab_host="Escherichia coli" /note="high-throughput plant RNAi cloning vector" rep_origin 18..672 /note="colE1" gene complement(820..1635) /gene="nptI" CDS complement(820..1635) /gene="nptI" /EC_number="2.7.1.95" /note="aminoglycoside 3'-phosphotransferase; confers kanamycin resistance in bacteria" /codon_start=1 /transl_table=11 /product="APH(3')I" /protein_id="AAS75425.1" /translation="MSHIQRETSCSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLY GKPDAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIP GKTAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGL VDASDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVG RVGIADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF" rep_origin 1925..2472 /note="pSa" repeat_region 2488..2512 /note="T-DNA left border" regulatory complement(2532..2791) /regulatory_class="polyA_signal_sequence" /note="nos terminator" gene complement(2806..3357) /gene="bar" CDS complement(2806..3357) /gene="bar" /note="phospinothricin N-acetyltransferase; confers Basta resistance in plants" /codon_start=1 /transl_table=11 /product="BAR" /protein_id="AAS75426.1" /translation="MSPERRPADIRRATEADMPAVCTIVNHYIETSTVNFRTEPQEPQ EWTDDLVRLRERYPWLVAEVDGEVAGIAYAGPWKARNAYDWTAESTVYVSPRHQRTGL GSTLYTHLLKSLEAQGFKSVVAVIGLPNDPSVRMHEALGYAPRGMLRAAGFKHGNWHD VGFWQLDFSLPVPPRPVLPVTEI" regulatory complement(3378..3661) /regulatory_class="promoter" /note="nos promoter" regulatory 3980..5317 /regulatory_class="promoter" /note="CaMV 35S promoter" misc_feature 5322..5446 /note="attR1 recombination site" gene complement(5875..6180) /gene="ccdB" CDS complement(5875..6180) /gene="ccdB" /note="cytotoxin; counterselection of Gateway cassette" /codon_start=1 /transl_table=11 /product="CCDB" /protein_id="AAS75427.1" /translation="MQFKVYTYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSD KVSRELYPVVHIGDESWRMMTTDMASVPVSVIGEEVADLSHRENDIKNAINLMFWGI" misc_feature complement(6619..6738) /note="attR2 recombination site" intron 6766..7544 /note="intron from Flaveria trinerva PDK gene encoding pyruvate orthophosphate dikinase" intron complement(7581..7763) /note="intron from Ricinus communis CAT1 gene encoding catalase" misc_feature 7791..7910 /note="attR2 recombination site" gene complement(8239..8544) /gene="ccdB" CDS complement(8239..8544) /gene="ccdB" /note="cytotoxin; counterselection of Gateway cassette" /codon_start=1 /transl_table=11 /product="CCDB" /protein_id="AAS75428.1" /translation="MQFKVYTYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSD KVSRELYPVVHIGDESWRMMTTDMASVPVSVIGEEVADLSHRENDIKNAINLMFWGI" misc_feature complement(9075..9199) /note="attR1 recombination site" regulatory 9208..9915 /regulatory_class="polyA_signal_sequence" /note="ocs terminator" repeat_region 10404..10429 /note="T-DNA right border" BASE COUNT 2994 a 2394 c 2261 g 2810 t ORIGIN 1 catgtgagca aaaggccagc aaaaggccag gaaccgtaaa aaggccgcgt tgctggcgtt 61 tttccatagg ctccgccccc ctgacgagca tcacaaaaat cgacgctcaa gtcagaggtg 121 gcgaaacccg acaggactat aaagatacca ggcgtttccc cctggaagct ccctcgtgcg 181 ctctcctgtt ccgaccctgc cgcttaccgg atacctgtcc gcctttctcc cttcgggaag 241 cgtggcgctt tctcatagct cacgctgtag gtatctcagt tcggtgtagg tcgttcgctc 301 caagctgggc tgtgtgcacg aaccccccgt tcagcccgac cgctgcgcct tatccggtaa 361 ctatcgtctt gagtccaacc cggtaagaca cgacttatcg ccactggcag cagccactgg 421 taacaggatt agcagagcga ggtatgtagg cggtgctaca gagttcttga agtggtggcc 481 taactacggc tacactagaa gaacagtatt tggtatctgc gctctgctga agccagttac 541 cttcggaaga agagttggta gctcttgatc cggcaaacaa accaccgctg gtagcggtgg 601 tttttttgtt tgcaagcagc agattacgcg cagaaaaaaa ggatctcaag aagatccttt 661 gatcttttct acggggtctg acgctcagtg gaacgaaaac tcacgttaag ggattttggt 721 catgagatta tcaaaaagga tcttcaccta gatcctttta aattaaaaat gaagttttaa 781 atcaatctaa agtatatatg tgtaacattg gtctagtgat tagaaaaact catcgagcat 841 caaatgaaac tgcaatttat tcatatcagg attatcaata ccatattttt gaaaaagccg 901 tttctgtaat gaaggagaaa actcaccgag gcagttccat aggatggcaa gatcctggta 961 tcggtctgcg attccgactc gtccaacatc aatacaacct attaatttcc cctcgtcaaa 1021 aataaggtta tcaagtgaga aatcaccatg agtgacgact gaatccggtg agaatggcaa 1081 aagtttatgc atttctttcc agacttgttc aacaggccag ccattacgct cgtcatcaaa 1141 atcactcgca tcaaccaaac cgttattcat tcgtgattgc gcctgagcga gacgaaatac 1201 gcgatcgctg ttaaaaggac aattacaaac aggaatcgaa tgcaaccggc gcaggaacac 1261 tgccagcgca tcaacaatat tttcacctga atcaggatat tcttctaata cctggaatgc 1321 tgttttccct gggatcgcag tggtgagtaa ccatgcatca tcaggagtac ggataaaatg 1381 cttgatggtc ggaagaggca taaattccgt cagccagttt agtctgacca tctcatctgt 1441 aacatcattg gcaacgctac ctttgccatg tttcagaaac aactctggcg catcgggctt 1501 cccatacaat cggtagattg tcgcacctga ttgcccgaca ttatcgcgag cccatttata 1561 cccatataaa tcagcatcca tgttggaatt taatcgcggc cttgagcaag acgtttcccg 1621 ttgaatatgg ctcataacac cccttgtatt actgtttatg taagcagaca gttttattgt 1681 tcatgatgat atatttttat cttgtgcaat gtaacatcag agattttgag acacaacgtg 1741 gctttgttga ataaatcgaa cttttgctga gttgaaggat cagatcacgc atcttcccga 1801 caacgcagac cgttccgtgg caaagcaaaa gttcaaaatc accaactggt ccacctacaa 1861 caaagctctc atcaaccgtg gctccctcac tttctggctg gatgatgggg cgattcaggc 1921 gatccccatc caacagcccg ccgtcgagcg ggctttttta tccccggaag cctgtggata 1981 gagggtagtt atccacgtga aaccgctaat gccccgcaaa gccttgattc acggggcttt 2041 ccggcccgct ccaaaaacta tccacgtgaa atcgctaatc agggtacgtg aaatcgctaa 2101 tcggagtacg tgaaatcgct aataaggtca cgtgaaatcg ctaatcaaaa aggcacgtga 2161 gaacgctaat agccctttca gatcaacagc ttgcaaacac ccctcgctcc ggcaagtagt 2221 aacagcaagt agtatgttca attagctttt caattatgaa tatatatatc aattattggt 2281 cgcccttggc ttgtggacaa tgcgctacgc gcaccggctc cgcccgtgga caaccgcaag 2341 cggttgccca ccgtcgagcg cctttgccca caacccggcg gccggccgca acagatcgtt 2401 ttataaattt ttttttttga aaaagaaaaa gcccgaaagg cggcaacctc tcgggcttct 2461 ggatttccga tccccggaat tagatcttgg caggatatat tgtggtgtaa cgttatcagc 2521 ttgcatgccg gtcgatctag taacatagat gacaccgcgc gcgataattt atcctagttt 2581 gcgcgctata ttttgttttc tatcgcgtat taaatgtata attgcgggac tctaatcata 2641 aaaacccatc tcataaataa cgtcatgcat tacatgttaa ttattacatg cttaacgtaa 2701 ttcaacagaa attatatgat aatcatcgca agaccggcaa caggattcaa tcttaagaaa 2761 ctttattgcc aaatgtttga acgatctgct tgactctagg ggtcatcaga tttcggtgac 2821 gggcaggacc ggacggggcg gcaccggcag gctgaagtcc agctgccaga aacccacgtc 2881 atgccagttc ccgtgcttga agccggccgc ccgcagcatg ccgcgggggg catatccgag 2941 cgcctcgtgc atgcgcacgc tcgggtcgtt gggcagcccg atgacagcga ccacgctctt 3001 gaagccctgt gcctccaggg acttcagcag gtgggtgtag agcgtggagc ccagtcccgt 3061 ccgctggtgg cggggggaga cgtacacggt cgactcggcc gtccagtcgt aggcgttgcg 3121 tgccttccag ggacccgcgt aggcgatgcc ggcgacctcg ccgtccacct cggcgacgag 3181 ccagggatag cgctcccgca gacggacgag gtcgtccgtc cactcctgcg gttcctgcgg 3241 ctcggtacgg aagttgaccg tgcttgtctc gatgtagtgg ttgacgatgg tgcagaccgc 3301 cggcatgtcc gcctcggtgg cacggcggat gtcggccggg cgtcgttctg ggctcatggt 3361 agatcccctc gatcgagttg agagtgaata tgagactcta attggatacc gaggggaatt 3421 tatggaacgt cagtggagca tttttgacaa gaaatatttg ctagctgata gtgaccttag 3481 gcgacttttg aacgcgcaat aatggtttct gacgtatgtg cttagctcat taaactccag 3541 aaacccgcgg ctcagtggct ccttcaacgt tgcggttctg tcagttccaa acgtaaaacg 3601 gcttgtcccg cgtcatcggc gggggtcata acgtgactcc cttaattctc cgctcatgat 3661 cgataacatt aacgcttaca atttccattc gccattcagg ctgcgcaact gttgggaagg 3721 gcgatcggtg cgggcctctt cgctattacg ccagctggcg aaagggggat gtgctgcaag 3781 gcgattaagt tgggtaacgc cagggttttc ccagtcacga cgttgtaaaa cgacggccag 3841 tgagcgcgcg taatacgact cactataggg cgaattgggt accgggcccc ccctcgaggt 3901 cgacggtatc gataagcttg atatcgaatt cctgcagccc gggggatcca ctagttctag 3961 agcggccgct cgacgaatta attccaatcc cacaaaaatc tgagcttaac agcacagttg 4021 ctcctctcag agcagaatcg ggtattcaac accctcatat caactactac gttgtgtata 4081 acggtccaca tgccggtata tacgatgact ggggttgtac aaaggcggca acaaacggcg 4141 ttcccggagt tgcacacaag aaatttgcca ctattacaga ggcaagagca gcagctgacg 4201 cgtacacaac aagtcagcaa acagacaggt tgaacttcat ccccaaagga gaagctcaac 4261 tcaagcccaa gagctttgct aaggccctaa caagcccacc aaagcaaaaa gcccactggc 4321 tcacgctagg aaccaaaagg cccagcagtg atccagcccc aaaagagatc tcctttgccc 4381 cggagattac aatggacgat ttcctctatc tttacgatct aggaaggaag ttcgaaggtg 4441 aaggtgacga cactatgttc accactgata atgagaaggt tagcctcttc aatttcagaa 4501 agaatgctga cccacagatg gttagagagg cctacgcagc aggtctcatc aagacgatct 4561 acccgagtaa caatctccag gagatcaaat accttcccaa gaaggttaaa gatgcagtca 4621 aaagattcag gactaattgc atcaagaaca cagagaaaga catatttctc aagatcagaa 4681 gtactattcc agtatggacg attcaaggct tgcttcataa accaaggcaa gtaatagaga 4741 ttggagtctc taaaaaggta gttcctactg aatctaaggc catgcatgga gtctaagatt 4801 caaatcgagg atctaacaga actcgccgtg aagactggcg aacagttcat acagagtctt 4861 ttacgactca atgacaagaa gaaaatcttc gtcaacatgg tggagcacga ccctctggtc 4921 taccccaaaa atgtcaaaga tacagtctca gaagaccaaa gggctattga gacttttcaa 4981 caaaggataa tttcgggaaa cctcctcgga ttccattgcc cagctatctg tcacttcatc 5041 gaaaggacag tagaaaagga aggtggctcc tacaaatgcc atcattgcga taaaggaaag 5101 gctatcattc aagatctctc tgccgacagt ggtcccaaag atggaccccc acccacgagg 5161 agcatcgtgg aaaaagaaga cgttccaacc acgtcttcaa agcaagtgga ttgatgtgac 5221 atctccactg acgtaaggga tgacgcacaa tcccactatc cttcgcaaga cccttcctct 5281 atataaggaa gttcatttca tttggagagg acacgctcga gacaagtttg tacaaaaaag 5341 ctgaacgaga aacgtaaaat gatataaata tcaatatatt aaattagatt ttgcataaaa 5401 aacagactac ataatactgt aaaacacaac atatccagtc actatgaatc aactacttag 5461 atggtattag tgacctgtag tcgaccgaca gccttccaaa tgttcttcgg gtgatgctgc 5521 caacttagtc gaccgacagc cttccaaatg ttcttctcaa acggaatcgc cgtatccagc 5581 ctactcgcta ttgtcctcaa tgccgtatta aatcataaaa agaaataaga aaaagaggtg 5641 cgagcctctt ttttgtgtga caaaataaaa acatctacct attcatatac gctagtgtca 5701 tagtcctgaa aatcatctgc atcaagaaca atttcacaac tcttatactt ttctcttaca 5761 agtcgttcgg cttcatctgg attttcagcc tctatactta ctaaacgtga taaagtttct 5821 gtaatttcta ctgtatcgac ctgcagactg gctgtgtata agggagcctg acatttatat 5881 tccccagaac atcaggttaa tggcgttttt gatgtcattt tcgcggtggc tgagatcagc 5941 cacttcttcc ccgataacgg agaccggcac actggccata tcggtggtca tcatgcgcca 6001 gctttcatcc ccgatatgca ccaccgggta aagttcacgg gagactttat ctgacagcag 6061 acgtgcactg gccaggggga tcaccatccg tcgcccgggc gtgtcaataa tatcactctg 6121 tacatccaca aacagacgat aacggctctc tcttttatag gtgtaaacct taaactgcat 6181 ttcaccagcc cctgttctcg tcagcaaaag agccgttcat ttcaataaac cgggcgacct 6241 cagccatccc ttcctgattt tccgctttcc agcgttcggc acgcagacga cgggcttcat 6301 tctgcatggt tgtgcttacc agaccggaga tattgacatc atatatgcct tgagcaactg 6361 atagctgtcg ctgtcaactg tcactgtaat acgctgcttc atagcatacc tctttttgac 6421 atacttcggg tgtgccgatc aacgtctcat tttcgccaaa agttggccca gggcttcccg 6481 gtatcaacag ggacaccagg atttatttat tctgcgaagt gatcttccgt cacaggtatt 6541 tattcggcgc aaagtgcgtc gggtgatgct gccaacttag tcgactacag gtcactaata 6601 ccatctaagt agttgattca tagtgactgg atatgttgtg ttttacagta ttatgtagtc 6661 tgttttttat gcaaaatcta atttaatata ttgatattta tatcatttta cgtttctcgt 6721 tcagctttct tgtacaaagt ggtctcgagg aattcggtac cccagcttgg taaggaaata 6781 attattttct tttttccttt tagtataaaa tagttaagtg atgttaatta gtatgattat 6841 aataatatag ttgttataat tgtgaaaaaa taatttataa atatattgtt tacataaaca 6901 acatagtaat gtaaaaaaat atgacaagtg atgtgtaaga cgaagaagat aaaagttgag 6961 agtaagtata ttatttttaa tgaatttgat cgaacatgta agatgatata ctagcattaa 7021 tatttgtttt aatcataata gtaattctag ctggtttgat gaattaaata tcaatgataa 7081 aatactatag taaaaataag aataaataaa ttaaaataat atttttttat gattaatagt 7141 ttattatata attaaatatc tataccatta ctaaatattt tagtttaaaa gttaataaat 7201 attttgttag aaattccaat ctgcttgtaa tttatcaata aacaaaatat taaataacaa 7261 gctaaagtaa caaataatat caaactaata gaaacagtaa tctaatgtaa caaaacataa 7321 tctaatgcta atataacaaa gcgcaagatc tatcaatttt atatagtatt atttttcaat 7381 caacattctt attaatttct aaataatact tgtagtttta ttaacttcta aatggattga 7441 ctattaatta aatgaattag tcgaacatga ataaacaagg taacatgata gatcatgtca 7501 ttgtgttatc attgatctta catttggatt gattacagtt gggaagctgg gttcgaaatc 7561 gataagcttg cgctgcagtt atcatcatca tcatagacac acgaaataaa gtaatcagat 7621 tatcagttaa agctatgtaa tatttacacc ataaccaatc aattaaaaaa tagatcagtt 7681 taaagaaaga tcaaagctca aaaaaataaa aagagaaaag ggtcctaacc aagaaaatga 7741 aggagaaaaa ctagaaattt acctgcacaa gcttggatcc tctagaccac tttgtacaag 7801 aaagctgaac gagaaacgta aaatgatata aatatcaata tattaaatta gattttgcat 7861 aaaaaacaga ctacataata ctgtaaaaca caacatatcc agtcactatg aatcaactac 7921 ttagatggta ttagtgacct gtagtcgact aagttggcag catcacccga cgcactttgc 7981 gccgaataaa tacctgtgac ggaagatcac ttcgcagaat aaataaatcc tggtgtccct 8041 gttgataccg ggaagccctg ggccaacttt tggcgaaaat gagacgttga tcggatttca 8101 caactcttat acttttctct tacaagtcgt tcggcttcat ctggattttc agcctctata 8161 cttactaaac gtgataaagt ttctgtaatt tctactgtat cgacctgcag actggctgtg 8221 tataagggag cctgacattt atattcccca gaacatcagg ttaatggcgt ttttgatgtc 8281 attttcgcgg tggctgagat cagccacttc ttccccgata acggagaccg gcacactggc 8341 catatcggtg gtcatcatgc gccagctttc atccccgata tgcaccaccg ggtaaagttc 8401 acgggagact ttatctgaca gcagacgtgc actggccagg gggatcacca tccgtcgccc 8461 gggcgtgtca ataatatcac tctgtacatc cacaaacaga cgataacggc tctctctttt 8521 ataggtgtaa accttaaact gcatttcacc agcccctgtt ctcgtcagca aaagagccgt 8581 tcatttcaat aaaccgggcg acctcagcca tcccttcctg attttccgct ttccagcgtt 8641 cggcacgcag acgacgggct tcattctgca tggttgtgct taccagaccg gagatattga 8701 catcatatat gccttgagca actgatagct gtcgctgtca actgtcactg taatacgctg 8761 cttcatagca tacctctttt tgacatactt cgggtatgat gcagatgatt ttcaggacta 8821 tgacactagc gtatatgaat aggtagatgt ttttattttg tcacacaaaa aagaggctcg 8881 cacctctttt tcttatttct ttttatgatt taatacggca ttgaggacaa tagcgagtag 8941 gctggatacg acgattccgt ttgagaagaa catttggaag gctgtcggtc gactaagttg 9001 gcagcatcac ccgaagaaca tttggaaggc tgtcggtcga ctacaggtca ctaataccat 9061 ctaagtagtt gattcatagt gactggatat gttgtgtttt acagtattat gtagtctgtt 9121 ttttatgcaa aatctaattt aatatattga tatttatatc attttacgtt tctcgttcag 9181 cttttttgta caaacttgtc tagagtcctg ctttaatgag atatgcgaga cgcctatgat 9241 cgcatgatat ttgctttcaa ttctgttgtg cacgttgtaa aaaacctgag catgtgtagc 9301 tcagatcctt accgccggtt tcggttcatt ctaatgaata tatcacccgt tactatcgta 9361 tttttatgaa taatattctc cgttcaattt actgattgta ccctactact tatatgtaca 9421 atattaaaat gaaaacaata tattgtgctg aataggttta tagcgacatc tatgatagag 9481 cgccacaata acaaacaatt gcgttttatt attacaaatc caattttaaa aaaagcggca 9541 gaaccggtca aacctaaaag actgattaca taaatcttat tcaaatttca aaagtgcccc 9601 aggggctagt atctacgaca caccgagcgg cgaactaata acgctcactg aagggaactc 9661 cggttccccg ccggcgcgca tgggtgagat tccttgaagt tgagtattgg ccgtccgctc 9721 taccgaaagt tacgggcacc attcaacccg gtccagcacg gcggccgggt aaccgacttg 9781 ctgccccgag aattatgcag catttttttg gtgtatgtgg gccccaaatg aagtgcaggt 9841 caaaccttga cagtgacgac aaatcgttgg gcgggtccag ggcgaatttt gcgacaacat 9901 gtcgaggctc agcaggacct gcaggcatgc aagctagctt actagtgatg catattctat 9961 agtgtcacct aaatctgcgg ccgccaccgc ggtggagctc cagcttttgt tccctttagt 10021 gagggttaat tgcgcgcttg gcgtaatcat ggtcatagct gtttcctgtg tgaaattgtt 10081 atccgctcac aattccacac aacatacgag ccggaagcat aaagtgtaaa gcctggggtg 10141 cctaatgagt gagctaactc acattaattg cgttgcgctc actgcccgct ttccagtcgg 10201 gaaacctgtc gtgccagctg cattaatgaa tcggccaacg cgcggggaga ggcggtttgc 10261 gtattgggcg ctcttccgct tcctcgctca ctgactcgct gcgctcggtc gttcggctgc 10321 ggcgagcggt atcagctcac tcaaaggcgg taatacggtt atccacagaa tcaggggata 10381 acgcaggaaa gaacatgaag gccttgacag gatatattgg cgggtaaact aagtcgctgt 10441 atgtgtttgt ttgagatct //