LOCUS AY422467 3011 bp DNA linear BCT 26-JUL-2016
DEFINITION Pseudomonas agarici LysR family transcriptional regulator (gstR)
gene, partial cds; and gamma-carboxymuconolactone decarboxylase CMD
(pcaC-1) and gamma-carboxymuconolactone decarboxylase CMD (pcaC-2)
genes, complete cds.
ACCESSION AY422467
VERSION AY422467.1
KEYWORDS .
SOURCE Pseudomonas agarici
ORGANISM Pseudomonas agarici
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 3011)
AUTHORS Hilario,E. and Young,J.M.
TITLE Evidence of horizontal gene transfer in Pseudomonas agarici by
genomic subtraction and codon usage analysis
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3011)
AUTHORS Hilario,E.
TITLE Direct Submission
JOURNAL Submitted (25-SEP-2003) Gene Technologies, HortResearch, 120 Mt
Albert Rd., Mt Albert, Auckland, New Zealand
FEATURES Location/Qualifiers
source 1..3011
/organism="Pseudomonas agarici"
/mol_type="genomic DNA"
/strain="ICMP 2656T"
/type_material="type strain of Pseudomonas agarici"
/db_xref="taxon:46677"
gene complement(<1..783)
/gene="gstR"
CDS complement(<1..783)
/gene="gstR"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="AAR38855.1"
/translation="MDRLEAMAILVATVEAGSFSAASRKLSVPLPTVSRKLAALEEHL
GVRLLMRSTRSLTLTEAGLTYLQSCKQILDQVTEAERSASGEYTTPRGELVVTAPVVF
GRLHLLPIINDFLASFPQINIRLILSDKTMHLVDDHIDAAVRVGRLPDSGMMATQVGT
VCRVVCASPEYLASHGKPTHPNDLIEHSCVNFEGLPSGALWTFAPAATPANILTVMVK
PRLSVNTAEAAIDAAIANVGLTHVLSYQISHAVEQQKLRLVLR"
gene 1123..1659
/gene="pcaC-1"
CDS 1123..1659
/gene="pcaC-1"
/EC_number="4.1.1.44"
/note="involved in the beta-ketoadipate pathway"
/codon_start=1
/transl_table=11
/product="gamma-carboxymuconolactone decarboxylase CMD"
/protein_id="AAR38853.1"
/translation="MSRVEIPSRENTPPETHAALDAIGKRLGFFPNLYRLTAMSPKTL
AALVGMQTPLMKALDLKTRERIALVVSEVNRCHYCVAAHTFVGLNLAKDSPEEMALAR
KGQSSNPKIQTIIQFAAKVAEMRGHVSEDEIDRVRKAGYSDAEIIEVIGLVIQFSFTN
YINNVFDTDIDFPTDTLA"
gene 1751..2296
/gene="pcaC-2"
CDS 1751..2296
/gene="pcaC-2"
/EC_number="4.1.1.44"
/note="involved in the beta-ketoadipate pathway"
/codon_start=1
/transl_table=11
/product="gamma-carboxymuconolactone decarboxylase CMD"
/protein_id="AAR38854.1"
/translation="MTRTIIPTRDSAKEEVRPTFDTVYKKLGFVPNVLRLTSLSPSTL
TALDKMQQSLDDSFDARLRAHVALAVSEVNTCLYCLATHTYMGMNFGKMYPSDLLLAR
RGMSNDRKMAAVGRFVKQLVTTRGHVTEAELILIREAGFSDEEILNIIGLSVQYMFTN
YINNVFDTKIDFPKVDVLGPN"
BASE COUNT 776 a 741 c 730 g 764 t
ORIGIN
1 acgaaggact aagcgcaatt tttgttgttc gaccgcatgg gaaatctgat atgacaaaac
61 atgagttagc cccacattcg caatggcagc atcaatagcg gcttcagcgg tgttgactga
121 aaggcgaggt ttcaccatta cagtcagtat atttgccggc gttgcagcag gcgcgaaagt
181 ccacaaagca cctgaaggca atccttcgaa attgacgcat gaatgctcta tgagatcatt
241 aggatgcgtg ggctttccgt ggctggccag gtattccggg ctcgcgcaaa ccacccgaca
301 gacagttcca acctgggtgg ccatcatgcc gctatccggt aatctaccga ctcgtacagc
361 ggcgtcgata tgatcatcca caagatgcat cgtcttgtcg gataatatca atcggatatt
421 aatttgcgga aacgaggcca agaaatcgtt aatgatgggt aggagatgaa ggcgtccaaa
481 gacgacaggt gcagttacaa ccaactcacc tcgaggtgtc gtgtattcac cggaggcaga
541 gcgctctgct tcggtcacct gatcgagaat ttgcttacaa gattgaagat aggtcaatcc
601 tgcttcagtc agcgtcaagc tacgagtaga acgcatcaat agccgaaccc ccaaatgctc
661 ctctaaagcc gcgagttttc gactgacggt tggcagcgga acggagagct tgcgacttgc
721 agcagaaaag ctcccggctt ccactgtagc taccaggatg gccatcgctt caagacgatc
781 cattttgtta atcctctcag aaaagcacgc attttggcac tgattgataa cctaccagtc
841 acttttgcgc aggtaaaggt gtggttccgg ctatgcaaaa tacgggataa tcatgtgtct
901 tgattcaggc atttttgagg gttttctttg tttaattata cggttgattt ttagcgtgaa
961 tggtggtgcc tggctgctat ggtgcgtggt acacgtcact ctcgtcaatt gacttctgtt
1021 ctcatttttt gaaatggttc ttcttgaaat tttctggtta tcactgcgct ctcaagtcga
1081 tagactgaac cgacaataca tatctcttac aggtggaaaa acatgtcacg cgtcgaaatt
1141 ccgagccggg aaaacacacc gccagaaacg cacgcagcct tggatgcgat aggaaagcgc
1201 cttggttttt tccccaatct gtatcggctc actgcaatga gtccgaaaac cctcgcggcg
1261 ttggtgggaa tgcaaactcc gttgatgaaa gcattggatt tgaagacacg tgagcgaatc
1321 gcacttgttg tttcagaggt caacaggtgt cattactgtg tagctgctca tacctttgtt
1381 ggactaaacc tggcgaaaga cagtccggaa gaaatggcgc ttgcacgaaa ggggcaatcg
1441 agcaatccga aaattcagac tattattcag ttcgctgcaa aagttgcgga aatgcgcggt
1501 cacgtcagtg aggacgagat tgatcgtgta cgaaaggcag gatactccga tgcggaaatt
1561 atcgaagtca ttggcctggt aatacaattc agctttacta attacatcaa taacgtattc
1621 gataccgaca ttgattttcc gacggatacg ttggcctaag cgttttatga atcatttaag
1681 gcgtagctgc gatagtgtca gtacaccgct cttgaaccgt tactgccaaa catcctattg
1741 aggtgcagtc atgacccgca ctataattcc cacacgagac agcgccaagg aggaagtgcg
1801 tcctacgttt gatactgttt acaaaaaact ggggtttgta cctaatgtat tgcgtttgac
1861 atcactctca cccagcacgc ttacagcctt ggacaaaatg cagcagtcgc tggacgacag
1921 cttcgatgcg aggcttcgcg cccatgtagc gctcgcggtg tctgaggtaa atacatgcct
1981 gtattgcctg gcgacacata cctatatggg tatgaatttt ggaaaaatgt acccgagtga
2041 tttattgctt gcccgacgag gtatgtccaa cgaccgaaaa atggcggcag tggggcggtt
2101 tgtcaaacaa cttgtcacca cgcgtgggca cgttaccgaa gcagaactca tactcattcg
2161 cgaagcaggc ttcagcgatg aggaaatatt gaatattatc ggtttaagtg ttcaatatat
2221 gtttaccaac tacatcaata atgtcttcga tacaaagatt gattttccca aggtggatgt
2281 gttgggcccg aactgacacg agtcggaatt agctcaatct aactatctca tgtacataga
2341 tgaaatttat catctgtgaa gatccgatca agcttatttg agccggcctc aaggcgcgca
2401 acgctcggca ggcttccctc cgctcctgcg tagcgcttac gggcgacaat cccagaatgc
2461 ttccagccag ccttgttgag agactttggg gaacattccg aattgttttt gggatggatc
2521 ttacagtcat tccttttctg ctttgtagcg tctcctcaat taaatttgcc tgactcggca
2581 tggcgcggat ttattgcgct ttgagttgcc ctgccagcgc gcccaagcct gccttagtcg
2641 ggcaaaaaac aacaataaaa atttcgtctt cggcaaccta cgccgagaca cccagaacaa
2701 ggaagtaggc ccatggcaca aacttcattc gcatatttca acgtcttcaa tcccggtaaa
2761 tccagacacc gggcatcacg cctcaaatgg cgggcgccga cccaggtcga tggcgataag
2821 caagatatta ctttcttggc ttctcactga ccccttcgcc ctggaggcct gaacatgctc
2881 aacccaccgc gcccgatctt cgaccatagc cggcacacac tcagcgttta cggggttgac
2941 gccttgctcg acgtcctcac ctttcagggc accgagggcc tgagccaacc gttcaactac
3001 tgcgtgaatt c
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