LOCUS AK242211 1370 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J075171C16, full insert
sequence.
ACCESSION AK242211
VERSION AK242211.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1370)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1370
/clone="J075171C16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 220..966
/db_xref="Osa1:LOC_Os03g08754"
/note="(Rice Genome Annotation Project) MADS-box
transcription factor 47, putative, expressed"
/note="mapping to R03-TIGRv4S1-000271R (Chr.3: short
arm=4498521, long arm=4504809, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAH01226.1"
/translation="MAGGGGGGGRGEGEGRAATGKRERIAIRRIDNLAARQVTFSKRR
RGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSMEQIIDRYNSHSKTLQRAEPSQ
LDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKT
KSKKILDEIDGLERKRMQLIEENLRLKEQVSRMSRMEEMQPGPDSEIVYEEGQSSESV
TNASYPRPPPDNDYSSDTSLRLGLSLFSSK"
BASE COUNT 352 a 303 c 400 g 315 t
ORIGIN
1 gattggtggt ggtctccatt gctcccttcc tccctgcctt tttcttccat aagtagtagt
61 agtagcggga gtggccgccg ccgcagccat agatctgcgg cgccgcgtat ctcgcggctg
121 gtttggctgg tgcggttagc ggctagggtt ttggttgttt cgtctgatcg atcctccccg
181 attttgcggc ggcggtggtg aattggtgtg tgatctgata tggctggcgg cggcggtggc
241 gggggaaggg gggaggggga ggggagggcg gcgacgggga agagggagag gatagcaata
301 cggaggatcg acaacctggc ggcgaggcag gtgaccttct cgaagcggag gagggggctg
361 ttcaagaagg ccgaggagct ctccatcctc tgcgacgccg aggtcgggct cgtcgtcttc
421 tccgccaccg gcaagctctt ccaattcgcc agcaccagca tggaacagat tattgaccgg
481 tacaactcgc attccaagac acttcagaga gcagaacctt ctcaactcga cttacaaggg
541 gaggacagca gtacttgtgc cagactaaag gaggagcttg cagaaactag ccttaggctg
601 aggcagatga gaggagagga gctgcacagg ctgaatgtgg aacagctgca ggagctagag
661 aagagcctcg agtccggtct aggctctgtt ctcaagacca agagcaagaa aattctggat
721 gagatcgatg gactggaacg aaagaggatg caattgatag aggagaattt aaggctgaag
781 gagcaagtgt ccaggatgtc aagaatggag gagatgcagc ctgggcctga ttcagaaatc
841 gtgtacgagg aagggcagtc gtctgaatct gtcaccaatg cttcttaccc gcgacctcca
901 cccgacaacg actacagctc tgatacatct ctcaggctcg ggttgtcact cttcagctcc
961 aagtgatggc tggaaactaa aactgagagg aaacagctgg atggcatgcc tgcatcgcca
1021 aatgatcagt gcatgcactg caagactgca acaaataaca cagttttaga ttgccagatg
1081 atgatgtgtg tgtgctgaga gtcactggct attatcgtac acataataac aatagaacga
1141 acaagttctt ctgttcttgg atgttacctg aattctactc ccatacatgt tgtcaatggc
1201 tctgtaatcg agtgtctgca attccagctg aaagcaaccg attacaggga aataagctat
1261 tttttcttaa agttctagct agcttggtac agttcataag ccgtagaaaa acaaaggcaa
1321 ataggacaat atatcaaaag tcatttttag gtaaagcttt tatatctcct
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