LOCUS AK241552 1788 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA, clone: J065177A21, full insert sequence. ACCESSION AK241552 VERSION AK241552.1 KEYWORDS FLI_CDNA; CAP trapper. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1788) AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K., Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T. TITLE Direct Submission JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Division of Genome and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Kikuchi,S. TITLE Oryza sativa full length cDNA JOURNAL Published Only in Database(2006) COMMENT This clone is one of the 2.6K full-length cDNA clones from japonica rice. URL:http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1788 /clone="J065177A21" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /note="50ppm CuSO4 for 1 week" /organism="Oryza sativa Japonica Group" /tissue_type="callus" CDS 531..1562 /db_xref="Osa1:LOC_Os12g03860" /note="(Rice Genome Annotation Project) major facilitator superfamily antiporter, putative, expressed" /note="mapping to R12-TIGRv4S1-000095R (Chr.12: short arm=1583175, long arm=1588083, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAH01053.1" /translation="MAVTTRFLLGALNGLLAPIKAYSIEVCRAEHQPLGLSIVSTAWG IGLVVGPATGGYLAQPVKQYPHIFHEKSIFGRFPYLLPCLCISLFALLVLLSCIWLPE TLHKHKGLEVGVETAEASTTQESAESHQKSLFRNWPLMSSIVTYCVFSLHDTAYSEIF SLWTVSDRKYGGLSFSSKDVGQVLAVAGASLLVYQLFIYGWVDKILGPIHSTRISAAL SVPIIAAYPFMTHLSGIRLGVALYSAAMIKSVLAITIITGTSLLQNKAVPQGQRGAAN GIATTAMSLFKAIAPAGAGVIFSWAQKRQHVAFFPGDQMVFLLLNLTEVIGLMLTFKP FLAVPQQYK" BASE COUNT 430 a 402 c 403 g 553 t ORIGIN 1 tcctcctcca cctcttacct cgtcgtcctg agcgctcctg gttgcagttg ccttctcctg 61 acaactcctc ttcgccttgg ctaagttagc tagctcatca tcacactctg catacgtgct 121 tgtcaactcc attgagagcg tcgccgttga tggctgagcc gccggcgacc aaggtgtacc 181 acgatggctg ccccggctgc gccatggagc agaggaagga ggagcacaag ggcattccct 241 acagggagtt cctcttcgtt gccatcacca ccctcgcctc ctctctgcca atctcttcct 301 tgttcccctt cctgtacttc atgataagag acttgcatgt tgctcggaca gaggaagata 361 ttggattcta tgctggattt cttggcgcat catatatgat cggtcgtggt ttcacatcga 421 tcttgtgggg tatggtggca gatcgtattg gccgtaagcc tgtcattatc ttttccattt 481 ttgcagtcat tgtgctcaat actttgtttg gattaagtgt gaagtactgg atggctgtta 541 ccacaagatt tcttcttggt gctctgaatg gattgcttgc accaataaag gcgtactcta 601 tcgaagtttg ccgagctgaa catcaacctt tgggcctatc aattgtgagc acagcatggg 661 ggataggtct tgtagttggc ccagcaactg ggggatacct cgcacagcct gtcaaacaat 721 atcctcatat ttttcatgag aagtcaatat ttgggagatt tccatatctt ctaccctgcc 781 tttgtatatc actttttgct ctcttggtcc tcctaagctg tatatggcta ccggagaccc 841 tacataagca taaaggcctt gaagtgggag tggagacagc tgaagcttct actactcaag 901 aaagtgcaga atcacatcag aaaagcttat tcagaaattg gccattgatg tcatctattg 961 tcacatattg tgtgttctcc cttcatgaca cagcatatag tgagatattt tctctgtgga 1021 ctgtaagtga tagaaaatat ggtggactca gcttttcatc taaagatgtt gggcaagttc 1081 ttgcagtggc aggtgccagc cttcttgtat atcagctttt tatctacggt tgggttgata 1141 aaattcttgg acctatccac tcaacccgca tttcagcggc actatctgta ccaattattg 1201 ctgcttatcc ctttatgaca cacttatcag gaataagact tggtgttgcc ctctatagtg 1261 cagcaatgat caaaagtgtt cttgctataa ctataattac gggcacctct cttctgcaaa 1321 acaaagcagt gccacaaggg caacggggtg ctgcaaatgg aatagccaca acagccatgt 1381 ccttgttcaa ggctattgct ccggctgggg caggagttat attttcttgg gcacaaaaga 1441 gacaacatgt ggcatttttt ccaggtgacc agatggtatt tcttctactg aatctgaccg 1501 aggtcattgg gctcatgtta accttcaaac ctttcttggc tgttcctcaa caatataaat 1561 agaacattca gatactgcta gctggtgtga caaagatcat aaagatgtag ttacagtgag 1621 taataagtat ggcttggtat taaaagatgg tttagatgtg gttatagcat aatggtagga 1681 tcatgcagca ttccagtgca gagtctctgt tggattttgt tctgctttgg gcttatgagc 1741 aagataacct tgtatattgc agtgttgaat ttgaataact gctcttct //