LOCUS AK240654 2735 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA, clone: J023098I11, full insert
sequence.
ACCESSION AK240654
VERSION AK240654.1
KEYWORDS FLI_CDNA; CAP trapper.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2735)
AUTHORS Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
Bito,T.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2006) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Division of Genome
and Biodiversity Research; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
REFERENCE 2
AUTHORS Kikuchi,S.
TITLE Oryza sativa full length cDNA
JOURNAL Published Only in Database(2006)
COMMENT This clone is one of the 2.6K full-length cDNA clones from
japonica rice.
URL:http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
Yamamoto,M. and Nakahama,Y.
NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2735
/clone="J023098I11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
/tissue_type="flower"
CDS 64..2538
/db_xref="Osa1:LOC_Os05g07880"
/note="(Rice Genome Annotation Project) phospholipase D
alpha 1 precursor, putative, expressed"
/note="mapping to R05-TIGRv4S1-000210R (Chr.5: short
arm=4233867, long arm=4238304, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAH00843.1"
/translation="MAKILLHGTMHVTIFEAESLSNPSRPSSQAPQFLRKLVEGIEDT
VGVGKGTSKVYATIGLDKARVGRTRTLADDTAAPRWYESFHVYCAHLATHVAFTLKAK
NPIGASLLGVGYLPVRDVLAGDEVDRWLPLCDDTDARTPIGDGGGKVHVKLQYFDISK
DRSWGRGVRSGKYPGVPYTFFSQRQGCKVTLYQDAHVPDGFIPRIPLDGGRSYEPHRC
WEDIFDAINGARHFIYITGWSVYTEIALIRDADRPKPGGGVTLGELLKKKAGEGVRVL
MLVWDDRTSVGMLKKDGLMATHDEETMNYFQGTEVNCVLCPRNPDDSGSIVQDLQIST
MFTHHQKIVVVDHDMPSSRHGGGNGGGRRRVVSFVGGLDLCDGRYDTPFHSLFRTLGT
AHHDDFHQPNFATATVAKGGPREPWHDIHCRLEGPVAWDVLYNFEQRWRKQGGKDLLV
QLRDLAETVIPPSPAMFPEDAESWNVQLFRSIDGGAAFGFPDTPEDAARAGLVSGKDQ
IIDRSIQDAYIAAIRRARSFIYIENQYFLGSSYCWKPNDGVKPEDVGALHLIPKELSM
KVVSKIEAGERFTVYVVVPMWPEGIPESGSVQAILDWQRRTMEMMYTDIAHAIQAKGI
DADPKDYLTFFCLGNREAKSAGEYEPPEQAEPDTGYFHAQQNRRFMIYVHTKMMIVDD
EYIIVGSANINQRSMDGARDSEIAMGAYQPHHLAAAGRPARGQVHGFRMALWYEHLGT
VDEAFQRPESLDCVRKVNAMADRCWDLYAGDGPERDLPGHLLTYPVGVAGDGTITQLP
GVEFFPDTQARILGAKSDYLPPILTT"
BASE COUNT 521 a 907 c 859 g 448 t
ORIGIN
1 gctgttcgat caatcggggt gatcatcgag atcgtgttga gggatagata gtttaatcta
61 acaatggcga agatcctgct ccatgggacg atgcacgtca ccatcttcga ggcggaatcg
121 ctctccaacc ctagcaggcc aagctcccaa gcgccccagt tcctccgcaa gctggtggag
181 gggatcgagg acacggtggg cgtgggcaag gggacgagca aggtgtacgc caccatcggc
241 ctcgacaagg cccgcgtcgg ccgcacccgc acgctcgccg acgacaccgc cgcgccgcgc
301 tggtacgagt ccttccacgt ctactgcgcc cacctcgcca cccacgtcgc cttcaccctc
361 aaggccaaga accccatcgg cgcctccctc ctcggcgtcg gctacctccc cgtccgggac
421 gtcctcgccg gcgacgaggt cgaccgctgg ctccccctct gcgacgacac cgacgcgcgc
481 acccccatcg gcgacggcgg cggcaaggtc cacgtcaagc tccagtactt cgacatctcc
541 aaggatcgga gctggggccg cggcgtccgc agcggcaagt accccggcgt gccctacacc
601 ttcttctcgc agcggcaagg atgcaaggtg acgttgtacc aggacgccca tgtccccgac
661 gggttcatcc cccggatccc gctcgacggc ggccggagct acgagccgca ccggtgctgg
721 gaggacatct tcgacgccat caatggcgcg aggcatttta tctatatcac tggttggtcg
781 gtgtacacgg agatcgcgct gatcagggac gccgaccggc cgaagcccgg cggcggcgtg
841 acgctcggcg agctgctgaa gaagaaggcc ggcgagggcg tgagggtgct gatgctggtg
901 tgggacgacc ggacgtcggt ggggatgctc aagaaggacg ggctcatggc gacgcacgac
961 gaggagacga tgaactactt ccagggcacg gaggtgaact gcgtgctgtg cccgcgcaac
1021 ccggacgact ccggcagcat cgtgcaggac ctgcagatct ccaccatgtt cacgcaccac
1081 cagaagatcg tcgtcgtcga ccacgacatg ccgtcgtcgc gccacggcgg cggcaatggc
1141 ggcgggcggc ggagggtggt gagcttcgtc ggcgggctgg acctctgcga cgggaggtac
1201 gacacgccgt tccactcgct gttccggacg ctggggacgg cgcaccacga cgacttccac
1261 cagccgaact tcgcgacggc gacggtggcc aagggcgggc cgcgcgagcc gtggcacgac
1321 atccactgcc gcctcgaggg ccccgtggcg tgggacgtgc tctacaactt cgagcagcgg
1381 tggcgcaagc agggcggcaa ggacctcctc gtccagctcc gggacctcgc cgagacggtc
1441 atcccgccgt cgccggcgat gttcccggag gacgccgagt cgtggaacgt gcagctgttc
1501 cgctccatcg acggcggcgc cgcgttcggc ttcccggaca cccccgagga cgccgcccgc
1561 gccggcctcg tcagcggcaa ggaccagatc atcgaccgga gcatccagga cgcctacatc
1621 gccgccatta ggagggcgcg gagcttcatc tacatcgaga accagtactt cctcgggagc
1681 tcctactgct ggaagcccaa cgacggcgtc aagccggaag atgtcggcgc gctccacctc
1741 atccccaagg agctctccat gaaggtggtg agcaagatcg aggccggcga gcgcttcacc
1801 gtctacgtcg tcgtgccgat gtggccggag ggcatcccgg agagcggctc cgtccaggcc
1861 atccttgact ggcagcgccg cactatggag atgatgtaca ccgacatcgc ccacgccatc
1921 caggccaagg gcatcgacgc cgaccccaag gactacctca ccttcttctg cctcggcaac
1981 cgcgaggcca agtccgccgg cgagtacgag ccaccggagc aggccgagcc cgacaccggc
2041 tacttccacg cgcagcagaa tcgccgcttc atgatctacg tccacaccaa gatgatgatc
2101 gtggacgacg agtacatcat cgtcgggtcg gcgaacatca accagaggtc gatggacggg
2161 gcgagggact cggagatcgc catgggagcg taccagccgc accacctggc ggcggcgggg
2221 cggccggcga gggggcaggt gcacgggttc aggatggcgc tgtggtacga gcacctcggt
2281 accgtcgacg aggcgttcca gcggccggag agcctcgact gcgtgcgcaa ggtgaacgcc
2341 atggcggaca ggtgctggga cctctacgcc ggcgacgggc cggagcgcga cctccccggc
2401 cacctgctca cctaccccgt cggcgtcgcc ggcgacggca ccatcacgca gctccccggc
2461 gtggagttct tcccggacac ccaggcgcgg atccttggcg ccaaatccga ctacctcccg
2521 ccaattttga ccacttaaag aagagctaaa ttaacctctc tgtgcgcttt atcgtcaatg
2581 agaagagatt tattttggtt ttttttactt ttgaataaga acaccacact agtttatggc
2641 ttctgtattt attttggaca ataacaactg cattaatgca gtgaaacatc atgatgagtt
2701 gctatttgtt atgacagatt tgctagtttc acact
//