LOCUS AK172138 1737 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus activated spleen cDNA, RIKEN full-length enriched
library, clone:F830047B17 product:signaling lymphocytic activation
molecule family member 1, full insert sequence.
ACCESSION AK172138
VERSION AK172138.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1737)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
Trust/MRC building Addenbrookes Hospital Cambridge) whose
assistance we gratefully acknowledge.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=F830047B17
FEATURES Location/Qualifiers
source 1..1737
/clone="F830047B17"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:F830047B17"
/db_xref="MGI:3557586"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="NOD"
/tissue_type="activated spleen"
CDS 74..1105
/codon_start=1
/note="putative"
/note="signaling lymphocytic activation molecule family
member 1 (MGD|MGI:1351314 GB|NM_013730, evidence: BLASTN,
99%, match=1733)"
/protein_id="BAE42842.1"
/transl_table=1
/translation="MDPKGSLSWRILLFLSLAFELSYGTGGGVMDCPVILQKLGQDTW
LPLTNEHQINKSVNKSVRILVTMATSPGSKSNKKIVSFDLSKGSYPDHLEDGYHFQSK
NLSLKILGNRRESEGWYLVSVEENVSVQQFCKQLKLYEQVSPPEIKVLNKTQENENGT
CSLLLACTVKKGDHVTYSWSDEAGTHLLSRANRSHLLHITLSNQHQDSIYNCTASNPV
SSISRTFNLSSQACKQESSSESSPWMQYTLVPLGVVIIFILVFTAIIMMKRQGKSNHC
QPPVEERSLTIYAQVQKSGPQEKKLHDALTDQDPCTTIYVAATEPAPESVQEPNPTTV
YASVTLPES"
BASE COUNT 510 a 436 c 400 g 391 t
ORIGIN
1 gagtaagcag ctgtcctgcc gagctgagct gagctgagct cacagctggg accctgtctg
61 cgattgctgg ctaatggatc ccaaaggatc cctttcctgg agaatacttc tgtttctctc
121 cctggctttt gagttgagct acggaacagg tggaggtgtg atggattgcc cagtgattct
181 ccagaagctg ggacaggaca cgtggctgcc cctgacgaat gaacatcaga taaataagag
241 cgtgaacaaa agtgtccgca tcctcgtcac catggcgacg tccccaggaa gcaaatccaa
301 caagaaaatt gtgtcttttg atctctctaa agggagctat ccagatcacc tggaggatgg
361 ctaccacttt caatcgaaaa acctgagcct gaagatcctc gggaacaggc gggagagtga
421 aggatggtac ttggtgagcg tggaggagaa cgtttctgtt cagcaattct gcaagcagct
481 gaagctttat gaacaggtct cccctccaga gattaaagtg ctaaacaaaa cccaggagaa
541 cgagaatggg acctgcagct tgctgttggc ctgcacagtg aagaaagggg accatgtgac
601 ttacagctgg agtgatgagg caggcaccca cctgctgagc cgagccaacc gctcccacct
661 cctgcacatc actcttagca accagcatca agacagcatc tacaactgca ccgcaagcaa
721 ccctgtcagc agtatctcta ggaccttcaa cctatcatcg caagcatgca agcaggaatc
781 ctcctcagaa tcgagtccat ggatgcaata tactcttgta ccactggggg tcgttataat
841 cttcatcctg gttttcacgg caataataat gatgaaaaga caaggtaaat caaatcactg
901 ccagccacca gtggaagaaa gaagccttac tatttatgcc caagtacaga aatcagggcc
961 tcaagagaag aaacttcatg atgccctaac agatcaggac ccctgcacaa ccatttatgt
1021 ggctgccaca gagcctgccc cagagtctgt ccaggaacca aaccccacca cagtttatgc
1081 cagtgtgaca ctgccagaga gctgacccat atacccagtg aaaggacttt ttgaaggagg
1141 atagaagaac caaaatccac actgaactgg accccgggtc ccaagttctc tgtgacagaa
1201 actgcacatc tgtaaccttc tccaatcagt tccctggtga cggatctgca caggcatgct
1261 tatgaagtag atgagaagtg aggcttcctg ggcatgcaac ctgctctgct gctgacacag
1321 acatgaagca gagatcccgt ggtacagtgt accatctttg ctgtagcaga taatgtgggt
1381 ttaggcatct cactctttgc tggactggat aacagaacta aaaaaaaaac caacaagcca
1441 aagacataga ctccatctca gatggctgag cacaaagtat aaaagccatt ttggctctct
1501 ggactttatt ctggaagctg atcctgatca cctcaaggcc aagggctcca tgcctcagtt
1561 tctctctcac cctctagatg aagagggaac aaagcataaa gagtgaaatc cttgttgtct
1621 gagatcattc tataaacgaa ctgacatttt atttgcaaaa ctcaagctag taattcagta
1681 gacttgaaga tgattttaga gcctcttatg cttcaaacaa cagaatgaaa tccatcc
//