LOCUS AK171383 779 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
full-length enriched library, clone:F730117G11
product:histocompatibility 2, class II antigen A, alpha, full
insert sequence.
ACCESSION AK171383
VERSION AK171383.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 779)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
Trust/MRC building Addenbrookes Hospital Cambridge) whose
assistance we gratefully acknowledge.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=F730117G11
FEATURES Location/Qualifiers
source 1..779
/cell_type="B6-derived CD11 +ve dendritic cells"
/clone="F730117G11"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:F730117G11"
/db_xref="MGI:3555757"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
CDS 50..>779
/codon_start=1
/note="histocompatibility 2, class II antigen A, alpha
(MGD|MGI:95895 GB|K01923, evidence: BLASTN, 100%,
match=753)"
/note="putative"
/protein_id="BAE42424.1"
/transl_table=1
/translation="MPCSRALILGVLALNTMLSLCGGEDDIEADHVGFYGTTVYQSPG
DIGQYTHEFDGDELFYVDLDKKKTVWRLPEFGQLILFEPQGGLQNIAAEKHNLGILTK
RSNFTPATNEAPQATVFPKSPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVTDGVY
ETSFLVNRDHSFHKLSYLTFIPSDDDIYDCKVEHWGLEEPVLKHWEPEIPAPMSELTE
TVVCALGLSVGLVGIVVGTIFIIQG"
BASE COUNT 186 a 205 c 198 g 190 t
ORIGIN
1 gcttttgaag actcaggaga gcagctgcag agacctccca gagaccagga tgccgtgcag
61 cagagctctg attctggggg tcctcgccct gaacaccatg ctcagcctct gcggaggtga
121 agacgacatt gaggccgacc acgtaggctt ctatggtaca actgtttatc agtctcctgg
181 agacattggc cagtacacac atgaatttga tggtgatgag ttgttctatg tggacttgga
241 taagaagaaa actgtctgga ggcttcctga gtttggccaa ttgatactct ttgagcccca
301 aggtggactg caaaacatag ctgcagaaaa acacaacttg ggaatcttga ctaagaggtc
361 aaatttcacc ccagctacca atgaggctcc tcaagcgact gtgttcccca agtcccctgt
421 gctgctgggt cagcccaaca cccttatctg ctttgtggac aacatcttcc cacctgtgat
481 caacatcaca tggctcagaa atagcaagtc agtcacagac ggcgtttatg agaccagctt
541 cctcgtcaac cgtgaccatt ccttccacaa gctgtcttat ctcaccttca tcccttctga
601 tgatgacatt tatgactgca aggtggagca ctggggcctg gaggagccgg ttctgaaaca
661 ctgggaacct gagattccag cccccatgtc agagctgaca gaaactgtgg tgtgtgccct
721 ggggttgtct gtgggccttg tgggcatcgt ggtgggcacc atcttcatca ttcaaggcc
//