LOCUS AK171232 2177 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
full-length enriched library, clone:F630312E20 product:CD244
natural killer cell receptor 2B4, full insert sequence.
ACCESSION AK171232
VERSION AK171232.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2177)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
Trust/MRC building Addenbrookes Hospital Cambridge) whose
assistance we gratefully acknowledge.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=F630312E20
FEATURES Location/Qualifiers
source 1..2177
/cell_type="NOD-derived CD11c +ve dendritic cells"
/clone="F630312E20"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:F630312E20"
/db_xref="MGI:3555463"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="NOD"
CDS 425..1621
/codon_start=1
/note="CD244 natural killer cell receptor 2B4
(MGD|MGI:109294 GB|AF184208, evidence: BLASTN, 98%,
match=1563)"
/note="putative"
/protein_id="BAE42329.1"
/transl_table=1
/translation="MLGQAVLFTTFLLLRAHQGQDCSDSPEEVVGVSGKPVRLRPSNI
QTKDVSVQWKKKVQGSHTNTEILISCNNNASRCSTVVSSDIYGFDYGDFALSIKSAQL
QDSGHYLLELTYRNGTVCTKNFQILILDHVETPHLKAQWNAWTNGTCQLFLSCSVPKD
DNVSYALYRGSTLISNQRNSTHWENQTDASSLHTYTCNVSNRASWANHTLNFTHGCQS
VHLNFRFLPFGVIIVILVTLFLGAIICFCVWTKKRKQLQFSPKEPLTIYEYVKDSRAS
RDQQGCSRASGSPSDVQEDGRGQRELDRRVSEVLEQLPQQNSPGDRGTMYSMIQCKPF
DSTSQEKCTVYSVVQPSRKSGSKKRNQNSSLSCTVYEEVGNPWLKAHNPARLSRRELE
NFDVYS"
regulatory 2161..2166
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 2177
/note="putative"
BASE COUNT 552 a 467 c 550 g 608 t
ORIGIN
1 gccttcagac ttctgcttcc acggtgtatg ctggtttggg gcagcctgga ataatgactg
61 ttggttttct ttcccaccct gtgggagcca ctgaaaattc agcaccaggc tgaggaggac
121 caagggctgg gattttgcaa ctgttttttt tttttttttt ttttttgtga gtcactgtgc
181 tgcactctga gcacccaccc actggaggca tcttagcttg tgggaaccca cgtggaggga
241 ctgaggcttt ctcggtagcc ttgtcagtgc acagcagaag tgaacagcct tcagttgagg
301 aaattgtggc tggacaggca gtgaggtagt tctgctgtgt cctgctgaca gttagctgcg
361 agcctattga catctgagca cctggagaag acagggcccc cgtagtctgc tctgtcctgt
421 ggggatgttg gggcaagctg ttctgttcac aacgtttctg ctcctcaggg ctcatcaggg
481 ccaagactgc tcagattctc ctgaagaagt ggttggtgtc tcaggaaagc ctgtccggct
541 gaggccttcc aacatacaga caaaagatgt ttctgttcaa tggaagaaga aagtacaggg
601 ctcacacaca aacactgaga tcctgatttc gtgtaataat aatgcttcca gatgctcaac
661 tgtggtttct agtgatatct atggctttga ttatggggat tttgctctta gtatcaagtc
721 agctcagctg caagacagtg gtcactacct gctggagctc acctacagaa acggaacagt
781 gtgcactaag aacttccaga ttcttatact tgatcatgtt gagacacctc acctgaaggc
841 ccagtggaac gcctggacta atgggacttg tcaactgttt ttgtcctgct cggtgcccaa
901 ggatgacaat gtgagctatg ctttgtacag agggagcacg ctgatctcaa atcaaaggaa
961 tagtacccac tgggagaacc agactgatgc cagcagcctg cacacatata cctgcaacgt
1021 tagcaacaga gccagctggg caaaccacac cctgaacttc acccatggct gtcagagtgt
1081 ccatttgaat ttcagatttc tgccctttgg ggtgatcatc gtgattctag ttacattatt
1141 tcttggggcc atcatttgct tctgtgtgtg gactaagaag aggaagcagt tacagttcag
1201 ccctaaggaa cctttgacaa tatatgaata tgtcaaggac tcacgagcca gtagggatca
1261 acaaggatgc tctagggcct ctggatctcc ctcagatgtc caggaagatg ggaggggaca
1321 aagagaattg gacaggcgcg tttctgaggt gctggagcag ttgccacagc agaattcccc
1381 tggagataga ggcaccatgt actctatgat ccagtgcaag ccttttgatt ccacatcaca
1441 agaaaaatgt acagtatatt cagtagtcca gccttccagg aagtctggat ccaagaagag
1501 gaaccagaac tcttccttaa gttgtaccgt gtacgaggag gttggaaacc catggctcaa
1561 agctcacaac cctgccaggc tgagccgcag agagctggag aactttgatg tctactccta
1621 gttgttagca gtggcctcat cctgtgtcat gcagcagcat tgactttgga aggaagcaca
1681 ttgaaggatg cttaagtccg tatgtgtctg tagaccagct tctaggctgg agagaatgta
1741 gtttattaac attgaaggat gctgagtctg tatgtgtctg tggaccagct tttaggctga
1801 agagaatgta gtttattaac attgaaggat gctgagtctg tatgtgtctg tggaccagct
1861 tctaggctga agagaatgta gtttattaac attgaagaat gctgagtctg tatatgtctg
1921 tggaccagct tctaggctgg agatgatgta gtttattcgt ggtttatatt ttatatttta
1981 ttatctttct ttttagacag gatctgacat agcttggcat ggcctgaatt tgctgagtag
2041 ccaagaatga ctttaaacct ttggtcctcc tgcctacact tcctagggtt tggaatcaca
2101 gtcatgtaac actgtgtata gcttaaaaaa aattctaaca gccactgtat gatcaaggtc
2161 attaaaaaat atcaccc
//