LOCUS AK171067 1506 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630222C19 product:CD84 antigen, full insert sequence. ACCESSION AK171067 VERSION AK171067.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1506) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Tissues were provided by Dr. John Todd (Dept. of Medical Genetics Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome Trust/MRC building Addenbrookes Hospital Cambridge) whose assistance we gratefully acknowledge. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=F630222C19 FEATURES Location/Qualifiers source 1..1506 /cell_type="NOD-derived CD11c +ve dendritic cells" /clone="F630222C19" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:F630222C19" /db_xref="MGI:3555135" /db_xref="taxon:10090" /mol_type="mRNA" /organism="Mus musculus" /strain="NOD" CDS 39..1025 /codon_start=1 /note="CD84 antigen (MGD|MGI:1336885 GB|AF043445, evidence: BLASTN, 99%, match=1113)" /note="putative" /protein_id="BAE42226.1" /transl_table=1 /translation="MAQRHLWIWFLCLQTWSEAAGKDADPMVMNGILGESVTFLLNIQ EPKKIDNIAWTSQSSVAFIKPGVNKAEVTITQGTYKGRIEIIDQKYDLVIRDLRMEDA GTYKADINEENEETITKIYYLHIYRRLKTPKITQSLISSLNNTCNITLTCSVEKEEKD VTYSWSPFGEKSNVLQIVHSPMDQKLTYTCTAQNPVSNSSDSVTVQQPCTDTPSFHPR HAVLPGGLAVLFLLILIPMLAFLFRLYKRRRDRIVLEDDVSKKTVYAVVSRNAQPTES RIYDEIPQSKMLSCKEDPVTTIYSSVQLSEKMKETNMKDRSLPKALGNEIVV" BASE COUNT 452 a 337 c 330 g 387 t ORIGIN 1 gagttatttt tcctcagaag actggagtct gactggacat ggcccagcgc catctgtgga 61 tctggttcct ttgcctacaa acctggtctg aagcagcagg aaaagatgca gacccgatgg 121 taatgaatgg gattcttggg gagtcagtta ctttcctctt aaatattcaa gaaccaaaga 181 aaattgacaa cattgcctgg acttctcaat catctgttgc ttttataaaa ccaggagtca 241 ataaagctga agttaccata acccagggca cttataaagg acgaatagaa atcatagatc 301 agaagtatga cctggtcatt agagacctga ggatggaaga tgcaggaact tacaaagcag 361 acatcaatga agagaatgag gaaaccatca ccaagatcta ctaccttcat atctaccgtc 421 gacttaaaac accaaaaatt acacagagtt tgatatcatc tttgaacaat acctgtaata 481 tcacactgac atgctctgtg gaaaaggaag aaaaggatgt cacatatagc tggagtccct 541 ttggagagaa aagcaatgtc cttcaaatcg tccactcccc catggaccaa aaactgacct 601 acacatgtac agcccagaac cctgtcagca acagttctga ctctgtcact gtccagcagc 661 catgtacaga cactccaagc ttccatcctc gccatgctgt gttgccagga ggattggccg 721 tgctctttct gcttattctc attccgatgt tggcatttct gttccgtttg tacaagagaa 781 ggcgagacag gattgtcctg gaagatgatg tctcaaagaa aacagtatat gctgtagttt 841 caagaaatgc tcaacccaca gagtccagaa tctatgatga aatccctcag tccaagatgc 901 tgtcctgtaa ggaagatcca gtgaccacca tttattcctc agtgcagctt tctgagaaga 961 tgaaggaaac caacatgaag gacagaagtc tgcctaaggc tttgggtaat gaaattgttg 1021 tctaggtgat tctctaagac cacgaaggac acaaggacaa gtcatctatg aggattgaat 1081 caacggtttc agtcttttgt atataacctg ggccagccaa gggatttagg aatgaagcaa 1141 gctccgtggg tagaggtctg atccccagtg tgtaatgtta ggggccatgt acaggattga 1201 ctctcaggcc cacagatctt tacccagaga aaccctgacc tgctcccatg ctgtttttcc 1261 tggggaaagg accctagggc actcaacatt tatgcaatca gacatgcctc tcagagactg 1321 tctaacagct tccagactaa tctctgtgca gtacttagtc ttacaactct cacaggcaac 1381 ggcttcaagt tccaatttta cgatgtgtct agcctgggat gactgtttag tttctaatgt 1441 ggcgagaatg tatgttacca tgtaggaagc acagactatg gcaatctata aatgatttgt 1501 ggcacg //