LOCUS       AK171067                1506 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630222C19 product:CD84
            antigen, full insert sequence.
ACCESSION   AK171067
VERSION     AK171067.1
KEYWORDS    HTC_FLI; HTC; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1506)
  AUTHORS   Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
            Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
            Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
            Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
            Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
            Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
            Contact:Yoshihide Hayashizaki
            The Institute of Physical and Chemical Research (RIKEN), Omics
            Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
            Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
            URL    :http://www.osc.riken.jp/
REFERENCE   2
  AUTHORS   
  CONSRTM   The FANTOM Consortium, Riken Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The Transcriptional Landscape of the Mammalian Genome
  JOURNAL   Science 309, 1559-1563 (2005)
REFERENCE   3
  AUTHORS   
  CONSRTM   RIKEN Genome Exploration Research Group and Genome Science Group
            (Genome Network Project Core Group) and the FANTOM Consortium
  TITLE     Antisense Transcription in the Mammalian Transcriptome
  JOURNAL   Science 309, 1564-1566 (2005)
REFERENCE   4
  AUTHORS   
  CONSRTM   The FANTOM Consortium and the RIKEN Genome Exploration Research
            Group Phase I and II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420, 563-573 (2002)
REFERENCE   5
  AUTHORS   
  CONSRTM   The RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409, 685-690 (2001)
REFERENCE   6
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
REFERENCE   7
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10, 1617-1630 (2000)
REFERENCE   8
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
            Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
            Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
            Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
            Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
            Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
            Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
            Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system-384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10, 1757-1771 (2000)
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
            Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
            Trust/MRC building Addenbrookes Hospital Cambridge) whose
            assistance we gratefully acknowledge.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=F630222C19
FEATURES             Location/Qualifiers
     source          1..1506
                     /cell_type="NOD-derived CD11c +ve dendritic cells"
                     /clone="F630222C19"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /db_xref="FANTOM_DB:F630222C19"
                     /db_xref="MGI:3555135"
                     /db_xref="taxon:10090"
                     /mol_type="mRNA"
                     /organism="Mus musculus"
                     /strain="NOD"
     CDS             39..1025
                     /codon_start=1
                     /note="CD84 antigen (MGD|MGI:1336885 GB|AF043445,
                     evidence: BLASTN, 99%, match=1113)"
                     /note="putative"
                     /protein_id="BAE42226.1"
                     /transl_table=1
                     /translation="MAQRHLWIWFLCLQTWSEAAGKDADPMVMNGILGESVTFLLNIQ
                     EPKKIDNIAWTSQSSVAFIKPGVNKAEVTITQGTYKGRIEIIDQKYDLVIRDLRMEDA
                     GTYKADINEENEETITKIYYLHIYRRLKTPKITQSLISSLNNTCNITLTCSVEKEEKD
                     VTYSWSPFGEKSNVLQIVHSPMDQKLTYTCTAQNPVSNSSDSVTVQQPCTDTPSFHPR
                     HAVLPGGLAVLFLLILIPMLAFLFRLYKRRRDRIVLEDDVSKKTVYAVVSRNAQPTES
                     RIYDEIPQSKMLSCKEDPVTTIYSSVQLSEKMKETNMKDRSLPKALGNEIVV"
BASE COUNT          452 a          337 c          330 g          387 t
ORIGIN      
        1 gagttatttt tcctcagaag actggagtct gactggacat ggcccagcgc catctgtgga
       61 tctggttcct ttgcctacaa acctggtctg aagcagcagg aaaagatgca gacccgatgg
      121 taatgaatgg gattcttggg gagtcagtta ctttcctctt aaatattcaa gaaccaaaga
      181 aaattgacaa cattgcctgg acttctcaat catctgttgc ttttataaaa ccaggagtca
      241 ataaagctga agttaccata acccagggca cttataaagg acgaatagaa atcatagatc
      301 agaagtatga cctggtcatt agagacctga ggatggaaga tgcaggaact tacaaagcag
      361 acatcaatga agagaatgag gaaaccatca ccaagatcta ctaccttcat atctaccgtc
      421 gacttaaaac accaaaaatt acacagagtt tgatatcatc tttgaacaat acctgtaata
      481 tcacactgac atgctctgtg gaaaaggaag aaaaggatgt cacatatagc tggagtccct
      541 ttggagagaa aagcaatgtc cttcaaatcg tccactcccc catggaccaa aaactgacct
      601 acacatgtac agcccagaac cctgtcagca acagttctga ctctgtcact gtccagcagc
      661 catgtacaga cactccaagc ttccatcctc gccatgctgt gttgccagga ggattggccg
      721 tgctctttct gcttattctc attccgatgt tggcatttct gttccgtttg tacaagagaa
      781 ggcgagacag gattgtcctg gaagatgatg tctcaaagaa aacagtatat gctgtagttt
      841 caagaaatgc tcaacccaca gagtccagaa tctatgatga aatccctcag tccaagatgc
      901 tgtcctgtaa ggaagatcca gtgaccacca tttattcctc agtgcagctt tctgagaaga
      961 tgaaggaaac caacatgaag gacagaagtc tgcctaaggc tttgggtaat gaaattgttg
     1021 tctaggtgat tctctaagac cacgaaggac acaaggacaa gtcatctatg aggattgaat
     1081 caacggtttc agtcttttgt atataacctg ggccagccaa gggatttagg aatgaagcaa
     1141 gctccgtggg tagaggtctg atccccagtg tgtaatgtta ggggccatgt acaggattga
     1201 ctctcaggcc cacagatctt tacccagaga aaccctgacc tgctcccatg ctgtttttcc
     1261 tggggaaagg accctagggc actcaacatt tatgcaatca gacatgcctc tcagagactg
     1321 tctaacagct tccagactaa tctctgtgca gtacttagtc ttacaactct cacaggcaac
     1381 ggcttcaagt tccaatttta cgatgtgtct agcctgggat gactgtttag tttctaatgt
     1441 ggcgagaatg tatgttacca tgtaggaagc acagactatg gcaatctata aatgatttgt
     1501 ggcacg
//