LOCUS AK169581 1106 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
full-length enriched library, clone:C920020C21 product:CD8
antigen, beta chain, full insert sequence.
ACCESSION AK169581
VERSION AK169581.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1106)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=C920020C21
FEATURES Location/Qualifiers
source 1..1106
/cell_type="thymic cells"
/clone="C920020C21"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:C920020C21"
/db_xref="MGI:3548216"
/db_xref="taxon:10090"
/dev_stage="2 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="thymus"
CDS 47..688
/codon_start=1
/note="CD8 antigen, beta chain (MGD|MGI:88347 GB|X07698,
evidence: BLASTN, 100%, match=1105)"
/note="putative"
/protein_id="BAE41240.1"
/transl_table=1
/translation="MQPWLWLVFSMKLAALWSSSALIQTPSSLLVQTNHTAKMSCEVK
SISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL
SIMNVKPEDSDFYFCATVGSPKMVFGTGTKLTVVDVLPTTAPTKKTTLKMKKKKQCPF
PHPETQKGLTCSLTTLSLLVVCILLLLAFLGVAVYFYCVRRRARIHFMKQFHK"
regulatory 1088..1093
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 1106
/note="putative"
BASE COUNT 287 a 295 c 273 g 251 t
ORIGIN
1 gagttgacag agcactgagg ggaacagtgt ccccaaaagc gccaagatgc agccatggct
61 ctggctggtc ttcagtatga agctggcagc tctctggagc agctctgccc tcattcagac
121 cccttcgtcc ctgctggttc aaaccaacca tacggcaaag atgtcctgtg aggttaaaag
181 catctctaag ttaacaagca tctactggct gcgggagcgc caggacccca aggacaagta
241 ctttgagttc ctggcctcct ggagttcttc caaaggagtt ttgtatggtg aaagtgtgga
301 caagaaaaga aatataattc ttgagtcttc agactcaaga cggccctttc tcagtatcat
361 gaatgtgaag ccagaggaca gtgacttcta cttctgcgcg acggttggga gccccaagat
421 ggtctttggg acagggacga agctgactgt ggttgatgtc cttcctacaa ctgccccaac
481 caagaagact accctgaaga tgaagaagaa gaagcaatgc ccgttccccc acccagagac
541 ccagaagggc ctgacatgca gccttaccac cctcagcctg ctggtagtct gcatcctgct
601 tctgctggca ttcctcggag tggccgtcta cttttactgt gtgcggagga gagcccgaat
661 tcacttcatg aaacagtttc acaaatgatc agcgcccaca acactgatag cctgctagca
721 ataaaaggac tgtaactcaa tcaaagcaag atttgaacta gtgagagaca gcgcattcaa
781 gactggagag gcccttgccc ttgctcaagc tgcctgcttt gaactgctgc aagctctgtg
841 tgtggtctgg ggtctcacag ggaaggcccc agaacccaag ctcactcaca gagtggctga
901 agaaccaaga actcccacac caccatgtac tcttcttgga ctgggccttg gacagtggcc
961 ttccagccac tgtctttgtc agttgcttgg tatgacagcc ttattgactc tttggccttt
1021 catggaaaag agctagccgg gaccctggag aagactgcaa atcctcacac agagaagcca
1081 cctcatgaat aaagttttct gcaaac
//