LOCUS AK162993 1306 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched
library, clone:A430039M10 product:CD8 antigen, beta chain, full
insert sequence.
ACCESSION AK162993
VERSION AK162993.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1306)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A430039M10
FEATURES Location/Qualifiers
source 1..1306
/clone="A430039M10"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:A430039M10"
/db_xref="MGI:3542696"
/db_xref="taxon:10090"
/dev_stage="0 day neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="thymus"
CDS 35..676
/codon_start=1
/note="CD8 antigen, beta chain (MGD|MGI:88347
GB|NM_009858, evidence: BLASTN, 99%, match=1305)"
/note="putative"
/protein_id="BAE37149.1"
/transl_table=1
/translation="MQPWLWLVFSMKLAALWSSSALIQTPSSLLVQTNHTAKMSCEVK
SISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKERNIILESSDSRRPFL
SIMNVKPEDSDFYFCATVGSPKMVFGTGTKLTVVDVLPTTAPTKKTTLKMKKKKQCPF
PHPETQKGLTCSLTTLSLLVVCILLLLAFLGVAVYFYCVRRRARIHFMKQFHK"
regulatory 1287..1292
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 1306
/note="putative"
BASE COUNT 323 a 346 c 314 g 323 t
ORIGIN
1 gactgagggg aacagtgtcc ccaaaagcgc caagatgcag ccatggctct ggctggtctt
61 cagtatgaag ctggcagctc tctggagcag ctctgccctc attcagaccc cttcgtccct
121 gctggttcaa accaaccata cggcaaagat gtcctgtgag gttaaaagca tctctaagtt
181 aacaagcatc tactggctgc gggagcgcca ggaccccaag gacaagtact ttgagttcct
241 ggcctcctgg agttcttcca aaggagtttt gtatggtgaa agtgtggaca aggaaagaaa
301 tataattctt gagtcttcag actcaagacg gccctttctc agtatcatga atgtgaagcc
361 agaggacagt gacttctact tctgcgcgac ggttgggagc cccaagatgg tctttgggac
421 agggacgaag ctgactgtgg ttgatgtcct tcctacaact gccccaacca agaagactac
481 cctgaagatg aagaagaaga agcaatgccc gttcccccac ccagagaccc agaagggcct
541 gacatgcagc cttaccaccc tcagcctgct ggtagtctgc atcctgcttc tgctggcatt
601 cctcggagtg gccgtctact tttactgtgt gcggaggaga gcccgaattc acttcatgaa
661 acagtttcac aaatgatcag cgcccacaac actgatagcc tgctagcaat aaaaggactg
721 taactcaatc aaagcaagat ttgaactagt gagagacagc gcattcaaga ctggagaggc
781 ccttgccctt gctcaagctg cctgctttga actgctgcaa gctctgtgtg tggtctgggg
841 tctcacaggg aaggccccag aacccaagct cactcacaga gtggctgaag aaccaagaac
901 tcccacacca ccatgtactc ttcttggact gggccttgga cagtggcctt ccagccactg
961 tctttgtcag ttgcttggta tgacagcctt attgactctt tggcctttca tggaaaagag
1021 ctagccggga ccctggagaa gactgcaaat cctcacacag agaagccacc tcatgaataa
1081 agttttctgc aaacagtttc agggctctca gcagccatct tactctctca ggccttgccg
1141 tgggtttggg aggctgttgg ctcaggagac agacttctac ttcatctcct agtaggaagt
1201 ttctaagctt cacttcttct ctctcgtggc ttatatattt cttctctcac tctctgccct
1261 tttaatgaaa atgttttggc tataaaaata aagtcctgcc gggcgt
//