LOCUS AK161775 3006 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male thymus cDNA, RIKEN full-length enriched
library, clone:5830499P10 product:CD4 antigen, full insert
sequence.
ACCESSION AK161775
VERSION AK161775.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3006)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=5830499P10
FEATURES Location/Qualifiers
source 1..3006
/clone="5830499P10"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:5830499P10"
/db_xref="MGI:3535910"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="thymus"
CDS 94..1467
/codon_start=1
/note="CD4 antigen (MGD|MGI:88335 GB|BC039137, evidence:
BLASTN, 100%, match=3006)"
/note="putative"
/protein_id="BAE36568.1"
/transl_table=1
/translation="MCRAISLRRLLLLLLQLSQLLAVTQGKTLVLGKEGESAELPCES
SQKKITVFTWKFSDQRKILGQHGKGVLIRGGSPSQFDRFDSKKGAWEKGSFPLIINKL
KMEDSQTYICELENRKEEVELWVFKVTFSPGTSLLQGQSLTLTLDSNSKVSNPLTECK
HKKGKVVSGSKVLSMSNLRVQDSDFWNCTVTLDQKKNWFGMTLSVLGFQSTAITAYKS
EGESAEFSFPLNFAEENGWGELMWKAEKDSFFQPWISFSIKNKEVSVQKSTKDLKLQL
KETLPLTLKIPQVSLQFAGSGNLTLTLDKGTLHQEVNLVVMKVAQLNNTLTCEVMGPT
SPKMRLTLKQENQEARVSEEQKVVQVVAPETGLWQCLLSEGDKVKMDSRIQVLSRGVN
QTVFLACVLGGSFGFLGFLGLCILCCVRCRHQQRQAARMSQIKRLLSEKKTCQCPHRM
QKSHNLI"
BASE COUNT 752 a 826 c 750 g 678 t
ORIGIN
1 cctcatatac acacacctgt gcaagaagca gagtgaagga aggactggcc agaggctcag
61 attcccaacc aacaagagct caaggagacc accatgtgcc gagccatctc tcttaggcgc
121 ttgctgctgc tgctgctgca gctgtcacaa ctcctagctg tcactcaagg gaagacgctg
181 gtgctgggga aggaagggga atcagcagaa ctgccctgcg agagttccca gaagaagatc
241 acagtcttca cctggaagtt ctctgaccag aggaagattc tggggcagca tggcaaaggt
301 gtattaatta gaggaggttc gccttcgcag tttgatcgtt ttgattccaa aaaaggggca
361 tgggagaaag gatcgtttcc tctcatcatc aataaactta agatggaaga ctctcagact
421 tatatctgtg agctggagaa caggaaagag gaggtggagt tgtgggtgtt caaagtgacc
481 ttcagtccgg gtaccagcct gttgcaaggg cagagcctga ccctgacctt ggatagcaac
541 tctaaggtct ctaacccctt gacagagtgc aaacacaaaa agggtaaagt tgtcagtggt
601 tccaaagttc tctccatgtc caacctaagg gttcaggaca gcgacttctg gaactgcacc
661 gtgaccctgg accagaaaaa gaactggttc ggcatgacac tctcagtgct gggttttcag
721 agcacagcta tcacggccta taagagtgag ggagagtcag cggagttctc cttcccactc
781 aactttgcag aggaaaacgg gtggggagag ctgatgtgga aggcagagaa ggattctttc
841 ttccagccct ggatctcctt ctccataaag aacaaagagg tgtccgtaca aaagtccacc
901 aaagacctca agctccagct gaaggaaacg ctcccactca ccctcaagat accccaggtc
961 tcgcttcagt ttgctggttc tggcaacctg actctgactc tggacaaagg gacactgcat
1021 caggaagtga acctggtggt gatgaaagtg gctcagctca acaatacttt gacctgtgag
1081 gtgatgggac ctacctctcc caagatgaga ctgaccctga agcaggagaa ccaggaggcc
1141 agggtctctg aggagcagaa agtagttcaa gtggtggccc ctgagacagg gctgtggcag
1201 tgtctactga gtgaaggtga taaggtcaag atggactcca ggatccaggt tttatccaga
1261 ggggtgaacc agacagtgtt cctggcttgc gtgctgggtg gctccttcgg ctttctgggt
1321 ttccttgggc tctgcatcct ctgctgtgtc aggtgccggc accaacagcg ccaggcagca
1381 cgaatgtctc agatcaagag gctcctcagt gagaagaaga cctgccagtg cccccaccgg
1441 atgcagaaga gccataatct catctgaggc ctaggcccca cctgcagccc accacctgcg
1501 tcctgtctca tcgcccgagg cctggggacc agatgaatgt agcagacacg ctgcctccgg
1561 ccttctgctc tcctcttcca caaccggcca cggtttccct ccctctgttc ccaagcctgt
1621 ctgtctgcag agcttgccct ctgcgtttca gacactcaag cacaccccat cagcttattt
1681 attcttcgct gctgcctttc tgccagagcc tcggcccttc tcggactaag gtcctggaac
1741 ctttttccag ctgtctgctt ggatcaaagg gcagtgtata gcacctggca cggatggtgg
1801 gactggtgtc tggaaataca cagcacagtt tacgagaggg ctctgggacc aagctgagtg
1861 gggcagggag ggccgggagg ttgtgcatgt cacacatgaa gcatgtcagg ggcaaatgaa
1921 gactgagagg ctgcgggagt cagcctcagc ttcccatgat gcctgcttct cttttgaatt
1981 tgcaagacca gactcacatt ctaaccagtg caccaacaca catccaagcc acacacctgt
2041 ccatatatcc aaacagcata tcttaattca taagccactt taatgtccca ggcattcgac
2101 ccttacaaaa accttacaag tggatgagcg gtaaaaagcc tcatgaactg agtggaagga
2161 gaggattaac tcttgaaagt tgtcccctat gtatgtacca tgaccctcat gtgtacacaa
2221 cacacacaca cacacacaca catacacaca cgaacacacg catgttgcac acatgcatgc
2281 acgctgaaat cctacaagct gacagtgatg actaagatgg cagagataac cagtcatccc
2341 tagtgaaatg gaacttggtt gaatgactac ccaaggttac ccagctaaca agtgctgatg
2401 tcagggccaa cccagggctc ctgatcccta gagccaagcc actacatgga acacagggat
2461 gaataccaca cagatctctg gagctagttc caggccctcg gtatacacac acacacacac
2521 acacacacac actggagcgc agcccctggc agagatcttg agaggatgga ggagccattc
2581 tggtttcaaa tccctccttg atcactgctg ttctcacccc cccctccttc ccccaaaacc
2641 ctagttctct tagagtgagg ctgggagaga tgcacagaga cctgccgcag tgtgtgcaga
2701 gcctgggaag tggaccatgc tggggtcctt tatggagaga gcattgtggc aggtggctgt
2761 gccttccatc caggaggtca ggggtctaag ggctctccct gagagtcttg atctgtttct
2821 catagatcca cagcctcctc tgcctctgtc gtttgcctgc ttcagcactt ccttcccctt
2881 ttttcctctt ttcttcccag ctggcctctt ctagaaacat cccttcccca cttctcttca
2941 ttattcactt cttatttttg cccactcccc actcctgctt cctgagctga cagaaaaata
3001 aaggct
//