LOCUS AK157075 1390 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus activated spleen cDNA, RIKEN full-length enriched
library, clone:F830119A14 product:CD84 antigen, full insert
sequence.
ACCESSION AK157075
VERSION AK157075.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1390)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
Trust/MRC building Addenbrookes Hospital Cambridge) whose
assistance we gratefully acknowledge.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=F830119A14
FEATURES Location/Qualifiers
source 1..1390
/clone="F830119A14"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:F830119A14"
/db_xref="MGI:3558090"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="NOD"
/tissue_type="activated spleen"
CDS 28..450
/codon_start=1
/note="CD84 antigen (MGD|MGI:1336885 GB|AF043445,
evidence: BLASTN, 99%, match=406)"
/note="putative"
/protein_id="BAE33953.1"
/transl_table=1
/translation="MAQRHLWIWFLCLQTWSEAAGKDADPMVMNGILGESVTFLLNIQ
EPKKIDNIAWTSQSSVAFIKPGVNKAEVTITQGTYKGRIEIIDQKYDLVIRDLRMEDA
GTYKADINEENEETITKIYYLHIYRKLWQHGALDLLLI"
BASE COUNT 453 a 299 c 248 g 390 t
ORIGIN
1 gttcagaaga ctggagtctg actggacatg gcccagcgcc atctgtggat ctggttcctt
61 tgcctacaaa cctggtctga agcagcagga aaagatgcag acccgatggt aatgaatggg
121 attcttgggg agtcagttac tttcctctta aatattcaag aaccaaagaa aattgacaac
181 attgcctgga cttctcaatc atctgttgct tttataaaac caggagtcaa taaagctgaa
241 gttaccataa cccagggcac ttataaagga cgaatagaaa tcatagatca gaagtatgac
301 ctggtcatta gagacctgag gatggaagat gcaggaactt acaaagcaga catcaatgaa
361 gagaatgagg aaaccatcac caagatctac taccttcata tctaccgtaa gttatggcag
421 cacggggcct tggatttact tttgatttga agatttatga tctaaaccac acccatattt
481 ctgataacag agtttcctaa ctcttcttat ccttataatt acataagcac atcagtactt
541 ataaaggtct aactttactt ctggccttga cagactttag ctgtaatctg ttttgcagca
601 gaatttgtcc tctgttcttt gttttccttt cctataaaat gtcaataatc atattaatca
661 atttgtaagc attattatga cattctagta agaaactata cgcagagtgg tctttataag
721 gcttctgctt ttaagataat tacagaatgc ataggaaaat gcaaagaact atgaaaggat
781 gtgttctgtg gcccttctct tgccctctcc tctgttatac tagatccaaa ctcttagtct
841 catcccccgt cttatacaga ccttctaggg tagcctttct tcattgtctc tcctgattcc
901 aaggagataa aataagcaga tcctggcaca cacctttgat tccagcactc aggaggcaaa
961 gacagaagga tctctatgag ttcaaggcta gcttggtctt cagagaaagt tccagaacag
1021 ccaagactaa caaaaagaaa ccctttctca aaccaacctc ccatccccat cctcaccccc
1081 caaaaactac tagaatgaaa gaaaaaaaat accaagacac aaaatgaaca gtgtctgagg
1141 aactcttatt tctgtaagta ttaatacttt cagaaatgca gaacagtgtt caaggtcaaa
1201 aacagaaaat tggaactttc ttggaatgtg ccagcactta cttaggaatg gaatcactta
1261 tattcctata aaatttaatc acatatatag caccggacag cattaatcac atatatagca
1321 ccggacatca taagcaaggt agtagtgaag caccatccca acattttctt gtctcagttc
1381 tgcagggcag
//