LOCUS AK156464 1389 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830022N04 product:CD84 antigen, full insert sequence. ACCESSION AK156464 VERSION AK156464.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1389) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Tissues were provided by Dr. John Todd (Dept. of Medical Genetics Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome Trust/MRC building Addenbrookes Hospital Cambridge) whose assistance we gratefully acknowledge. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=F830022N04 FEATURES Location/Qualifiers source 1..1389 /clone="F830022N04" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:F830022N04" /db_xref="MGI:3557137" /db_xref="taxon:10090" /mol_type="mRNA" /organism="Mus musculus" /strain="NOD" /tissue_type="activated spleen" CDS 28..450 /codon_start=1 /note="CD84 antigen (MGD|MGI:1336885 GB|AF043445, evidence: BLASTN, 99%, match=407)" /note="putative" /protein_id="BAE33721.1" /transl_table=1 /translation="MAQRHLWIWFLCLQTWSEAAGKDADPMVMNGILGESVTFLLNIQ EPKKIDNIAWTSQSSVAFIKPGVNKAEVTITQGTYKGRIEIIDQKYDLVIRDLRMEDA GTYKADINEENEETITKIYYLHIYRKLWQHGALDLLLI" BASE COUNT 453 a 300 c 247 g 389 t ORIGIN 1 gctcagaaga ctggagtctg actggacatg gcccagcgcc atctgtggat ctggttcctt 61 tgcctacaaa cctggtctga agcagcagga aaagatgcag acccgatggt aatgaatggg 121 attcttgggg agtcagttac tttcctctta aatattcaag aaccaaagaa aattgacaac 181 attgcctgga cttctcaatc atctgttgct tttataaaac caggagtcaa taaagctgaa 241 gttaccataa cccagggcac ttataaagga cgaatagaaa tcatagatca gaagtatgac 301 ctggtcatta gagacctgag gatggaagat gcaggaactt acaaagcaga catcaatgaa 361 gagaatgagg aaaccatcac caagatctac taccttcata tctaccgtaa gttatggcag 421 cacggggcct tggatttact tttgatttga agatttatga tctaaaccac acccatattt 481 ctgataacag agtttcctaa ctcttcttat ccttataatt acataagcac atcagtactt 541 ataaaggtct aactttactt ctggccttga cagactttag ctgtaatctg ttttgcagca 601 gaatttgtcc tctgttcttt gttttccttt cctataaaat gtcaataatc atattaatca 661 atttgtaagc attattatga cattctagta agaaactata cgcagagtgg tctttataag 721 gcttctgctt ttaagataat tacagaatgc ataggaaaat gcaaagaact atgaaaggat 781 gtgttctgtg cccttctctt gccctctcct ctgttatact agatccaaac tcttagtctc 841 atcccccgtc ttatacagac cttctagggt agcctttctt cattgtctct cctgattcca 901 aggagataaa ataagcagat cctggcacac acctttgatt ccagcactca ggaggcaaag 961 acagaaggat ctctatgagt tcaaggctag cttggtcttc agagaaagtt ccagaacagc 1021 caagactaac aaaaagaaac cctttctcaa accaacctcc catccccatc ctcacccccc 1081 aaaaactact agaatgaaag aaaaaaaata ccaagacaca aaatgaacag tgtctgagga 1141 actcttattt ctgtaagtat taatactttc agaaatgcag aacagtgttc aaggtcaaaa 1201 acagaaaatt ggaactttct tggaatgtgc cagcacttac ttaggaatgg aatcacttat 1261 attcctataa aatttaatca catatatagc accggacagc attaatcaca tatatagcac 1321 cggacatcat aagcaaggta gtagtgaagc accatcccaa cattttcttg tctcagttct 1381 gcagggcag //