LOCUS       AK156464                1389 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830022N04 product:CD84 antigen, full insert
            sequence.
ACCESSION   AK156464
VERSION     AK156464.1
KEYWORDS    HTC_FLI; HTC; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1389)
  AUTHORS   Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
            Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
            Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
            Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
            Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
            Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
            Contact:Yoshihide Hayashizaki
            The Institute of Physical and Chemical Research (RIKEN), Omics
            Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
            Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
            URL    :http://www.osc.riken.jp/
REFERENCE   2
  AUTHORS   
  CONSRTM   The FANTOM Consortium, Riken Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The Transcriptional Landscape of the Mammalian Genome
  JOURNAL   Science 309, 1559-1563 (2005)
REFERENCE   3
  AUTHORS   
  CONSRTM   RIKEN Genome Exploration Research Group and Genome Science Group
            (Genome Network Project Core Group) and the FANTOM Consortium
  TITLE     Antisense Transcription in the Mammalian Transcriptome
  JOURNAL   Science 309, 1564-1566 (2005)
REFERENCE   4
  AUTHORS   
  CONSRTM   The FANTOM Consortium and the RIKEN Genome Exploration Research
            Group Phase I and II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420, 563-573 (2002)
REFERENCE   5
  AUTHORS   
  CONSRTM   The RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409, 685-690 (2001)
REFERENCE   6
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
REFERENCE   7
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10, 1617-1630 (2000)
REFERENCE   8
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
            Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
            Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
            Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
            Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
            Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
            Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
            Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system-384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10, 1757-1771 (2000)
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
            Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
            Trust/MRC building Addenbrookes Hospital Cambridge) whose
            assistance we gratefully acknowledge.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=F830022N04
FEATURES             Location/Qualifiers
     source          1..1389
                     /clone="F830022N04"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /db_xref="FANTOM_DB:F830022N04"
                     /db_xref="MGI:3557137"
                     /db_xref="taxon:10090"
                     /mol_type="mRNA"
                     /organism="Mus musculus"
                     /strain="NOD"
                     /tissue_type="activated spleen"
     CDS             28..450
                     /codon_start=1
                     /note="CD84 antigen (MGD|MGI:1336885 GB|AF043445,
                     evidence: BLASTN, 99%, match=407)"
                     /note="putative"
                     /protein_id="BAE33721.1"
                     /transl_table=1
                     /translation="MAQRHLWIWFLCLQTWSEAAGKDADPMVMNGILGESVTFLLNIQ
                     EPKKIDNIAWTSQSSVAFIKPGVNKAEVTITQGTYKGRIEIIDQKYDLVIRDLRMEDA
                     GTYKADINEENEETITKIYYLHIYRKLWQHGALDLLLI"
BASE COUNT          453 a          300 c          247 g          389 t
ORIGIN      
        1 gctcagaaga ctggagtctg actggacatg gcccagcgcc atctgtggat ctggttcctt
       61 tgcctacaaa cctggtctga agcagcagga aaagatgcag acccgatggt aatgaatggg
      121 attcttgggg agtcagttac tttcctctta aatattcaag aaccaaagaa aattgacaac
      181 attgcctgga cttctcaatc atctgttgct tttataaaac caggagtcaa taaagctgaa
      241 gttaccataa cccagggcac ttataaagga cgaatagaaa tcatagatca gaagtatgac
      301 ctggtcatta gagacctgag gatggaagat gcaggaactt acaaagcaga catcaatgaa
      361 gagaatgagg aaaccatcac caagatctac taccttcata tctaccgtaa gttatggcag
      421 cacggggcct tggatttact tttgatttga agatttatga tctaaaccac acccatattt
      481 ctgataacag agtttcctaa ctcttcttat ccttataatt acataagcac atcagtactt
      541 ataaaggtct aactttactt ctggccttga cagactttag ctgtaatctg ttttgcagca
      601 gaatttgtcc tctgttcttt gttttccttt cctataaaat gtcaataatc atattaatca
      661 atttgtaagc attattatga cattctagta agaaactata cgcagagtgg tctttataag
      721 gcttctgctt ttaagataat tacagaatgc ataggaaaat gcaaagaact atgaaaggat
      781 gtgttctgtg cccttctctt gccctctcct ctgttatact agatccaaac tcttagtctc
      841 atcccccgtc ttatacagac cttctagggt agcctttctt cattgtctct cctgattcca
      901 aggagataaa ataagcagat cctggcacac acctttgatt ccagcactca ggaggcaaag
      961 acagaaggat ctctatgagt tcaaggctag cttggtcttc agagaaagtt ccagaacagc
     1021 caagactaac aaaaagaaac cctttctcaa accaacctcc catccccatc ctcacccccc
     1081 aaaaactact agaatgaaag aaaaaaaata ccaagacaca aaatgaacag tgtctgagga
     1141 actcttattt ctgtaagtat taatactttc agaaatgcag aacagtgttc aaggtcaaaa
     1201 acagaaaatt ggaactttct tggaatgtgc cagcacttac ttaggaatgg aatcacttat
     1261 attcctataa aatttaatca catatatagc accggacagc attaatcaca tatatagcac
     1321 cggacatcat aagcaaggta gtagtgaagc accatcccaa cattttcttg tctcagttct
     1381 gcagggcag
//