LOCUS AK155002 1586 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
full-length enriched library, clone:F630115H21 product:programmed
cell death 1 ligand 2, full insert sequence.
ACCESSION AK155002
VERSION AK155002.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1586)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
Trust/MRC building Addenbrookes Hospital Cambridge) whose
assistance we gratefully acknowledge.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=F630115H21
FEATURES Location/Qualifiers
source 1..1586
/cell_type="NOD-derived CD11c +ve dendritic cells"
/clone="F630115H21"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:F630115H21"
/db_xref="MGI:3554413"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="NOD"
CDS 177..920
/codon_start=1
/note="programmed cell death 1 ligand 2 (MGD|MGI:1930125
GB|AF142780, evidence: BLASTN, 100%, match=942)"
/note="putative"
/protein_id="BAE32986.1"
/transl_table=1
/translation="MLLLLPILNLSLQLHPVAALFTVTAPKEVYTVDVGSSVSLECDF
DRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRC
LVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSV
PANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSRMEPKVP
RTWPLHVFIPACTIALIFLAIVIIQRKRI"
BASE COUNT 389 a 400 c 391 g 406 t
ORIGIN
1 ggttgtctcc ttctgtctcc caactagaga gaacacactt acggctcctg tcccgggcag
61 gtttggttgt cggtgtgatt ggcttccagg gaacctgata caaggagcaa ctgtgtgctg
121 ccttttctgt gtctttgctt gaggagctgt gctgggtgct gatattgaca cagaccatgc
181 tgctcctgct gccgatactg aacctgagct tacaacttca tcctgtagca gctttattca
241 ccgtgacagc ccctaaagaa gtgtacaccg tagacgtcgg cagcagtgtg agcctggagt
301 gcgattttga ccgcagagaa tgcactgaac tggaagggat aagagccagt ttgcagaagg
361 tagaaaatga tacgtctctg caaagtgaaa gagccaccct gctggaggag cagctgcccc
421 tgggaaaggc tttgttccac atccctagtg tccaagtgag agattccggg cagtaccgtt
481 gcctggtcat ctgcggggcc gcctgggact acaagtacct gacggtgaaa gtcaaagctt
541 cttacatgag gatagacact aggatcctgg aggttccagg tacaggggag gtgcagctta
601 cctgccaggc tagaggttat cccctagcag aagtgtcctg gcaaaatgtc agtgttcctg
661 ccaacaccag ccacatcagg acccccgaag gcctctacca ggtcaccagt gttctgcgcc
721 tcaagcctca gcctagcaga aacttcagct gcatgttctg gaatgctcac atgaaggagc
781 tgacttcagc catcattgac cctctgagtc ggatggaacc caaagtcccc agaacgtggc
841 cacttcatgt tttcatcccg gcctgcacca tcgctttgat cttcctggcc atagtgataa
901 tccagagaaa gaggatctag gggaagctgt attacggaag aagatctgga cctgcggtct
961 tgggagttgg aaggatctga tgggaaaccc tcaagagact tctggactca aagtgagaat
1021 cttgcaggac ctgccatttg cacttttgaa ccctttggac ggtgacccag ggctccgaag
1081 aggagcttgt aagactgaca atcttccctc tgtctcaaga ctctctgaac agcaagaccc
1141 caatggcact ttagacttac ccctgggatc ctggacccca gtgagggcct aaggctccta
1201 atgactttca gggtgagaac aaaaggaatt gctctccgcc ccacccccac ctcctgcttt
1261 ccgcagggag acatggaaat tcccagttac taaaatagat tgtcaataga gttatttata
1321 gccctcattt cctccgggga cttggaagct tcagacaggg tttttcataa acaaagtcat
1381 aactgatgtg ttttacagca tcctagaatc ctggcagcct ctgaagttct aattaactgg
1441 aagcatttaa gcaacacgtt aagtaccccc actgtggtat ttgtttctac ttttctgttt
1501 ttaaagtgtg agtcacaagg taattgttgt aacctgtgat atcactgttt cttgtgtctc
1561 ttctttcaac tacatctttt aaaacg
//