LOCUS AK154834 3135 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
full-length enriched library, clone:F630108I06 product:CD84
antigen, full insert sequence.
ACCESSION AK154834
VERSION AK154834.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3135)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
Trust/MRC building Addenbrookes Hospital Cambridge) whose
assistance we gratefully acknowledge.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=F630108I06
FEATURES Location/Qualifiers
source 1..3135
/cell_type="NOD-derived CD11c +ve dendritic cells"
/clone="F630108I06"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:F630108I06"
/db_xref="MGI:3554112"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="NOD"
CDS 25..1014
/codon_start=1
/note="CD84 antigen (MGD|MGI:1336885 GB|AF043445,
evidence: BLASTN, 99%, match=1102)"
/note="putative"
/protein_id="BAE32863.1"
/transl_table=1
/translation="MAQRHLWIWFLCLQTWSEAAGKDADPVVMNGILGESVTFLLNIQ
EPKKIDNIAWTSQSSVAFIKPGVNKAEVTITQGTYKGRIEIIDQKYDLVIRDLRMEDA
GTYKADINEENEETITKIYYLHIYRRLKTPKITQSLISSLNNTCNITLTCSVEKEEKD
VTYSWSPFGEKSNVLQIVHSPMDQKLTYTCTAQNPVSNSSDSVTVQQPCTDTPSFHPR
HAVLPGGLAVLFLLILIPMLAFLFRLYKRRRDRIVLEADDVSKKTVYAVVSRNAQPTE
SRIYDEIPQSKMLSCKKDPVTTIYSSVQLSEKMKETNMKDRSLPKALGNEIVV"
regulatory 3119..3124
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 3135
/note="putative"
BASE COUNT 948 a 638 c 657 g 892 t
ORIGIN
1 gagaagactg gagtctgact ggacatggcc cagcgccatc tgtggatctg gttcctttgc
61 ctacaaacct ggtctgaagc agcaggaaaa gatgcagacc cggtggtaat gaatgggatt
121 cttggggagt cagttacttt cctcttaaat attcaagaac caaagaaaat tgacaacatt
181 gcctggactt ctcaatcatc tgttgctttt ataaaaccag gagtcaataa agctgaagtt
241 accataaccc agggcactta taaaggacga atagaaatca tagatcagaa gtatgacctg
301 gtcattagag acctgaggat ggaagatgca ggaacttaca aagcagacat caatgaagag
361 aatgaggaaa ccatcaccaa gatctactac cttcatatct accgtcgact taaaacacca
421 aaaattacac agagtttgat atcatctttg aacaatacct gtaatatcac actgacatgc
481 tctgtggaaa aggaagaaaa ggatgtcaca tatagctgga gtccctttgg agagaaaagc
541 aatgtccttc aaatcgtcca ctcccccatg gaccaaaaac tgacctacac atgtacagcc
601 cagaaccctg tcagcaacag ttctgactct gtcactgtcc agcagccatg tacagacact
661 ccaagcttcc atcctcgcca tgctgtgttg ccaggaggat tggccgtgct ctttctgctt
721 attctcattc cgatgttggc atttctgttc cgtttgtata agagaaggcg agacaggatt
781 gtcctggaag cagatgatgt ctcaaagaaa acagtatatg ctgtagtttc aagaaatgct
841 caacccacag agtccagaat ctatgatgaa atccctcagt ccaagatgct gtcctgtaag
901 aaagatccgg tgaccaccat ttattcctca gtgcagcttt ctgagaagat gaaggaaacc
961 aacatgaagg acagaagtct gcctaaggct ttgggtaatg aaattgttgt ctaggtgatt
1021 ctctaagacc acgaaggaca caaggacaag tcatctatga ggattgaatc aacggtttca
1081 gtcttttgga tataacctgg gccagccaag ggatttagga atgaagcaag ctccgtgggt
1141 agaggtctga tccccagtgt gtaatgttag gggccatgta caggattgac tctcaggccc
1201 acagatcttt acccagagaa accctgacct gctcccatgc tgtttttcct ggggaaagga
1261 ccctagggca ctcaaccttt atgcaatcag acatgcctct cagagactgt ctaacagctt
1321 ccagactaat ctctgtgcag tacttagtct tacaactctc acgggcaacg gcttcaagtt
1381 ccaattttac gatgtgtcta gcctgggatg actgtttagt ttctaatgtg gcgagaatgt
1441 atgttaccat gtaggaagca cagactatgg caatctataa atgatttgtg gcatgagact
1501 gatgtccgaa tttaggggaa ggggaatggt cttacttagg cattttatgg aaattgagtc
1561 tctctccccg agaagagggt gatgaagcag catccacgtc tgcctcttct ccagtaacct
1621 gcttgttatc gacaatgtcc agccgatggt aatgaactga aacaaatgcg cttgaaagag
1681 atgaatcaat ttgagattta acaaatcggg tcaatttctg aaatgcccaa ggaccgaagg
1741 agatcaataa taggagtccc aataggggcc ctaaaaggga gggcaacaag gttgaaagtc
1801 agggggaggt tgaaaaccag ttttggtagt ctaccttccc cctaggccat tgtaaatact
1861 tgtgtatggg tgtaactcag ctatctatag ttctaagtat ccactctggt tcctctttag
1921 gtcttaaact tccttcttcc tagttgatgg taaattcctg tgtaaggcag tggcctagct
1981 tttattcaaa gtgatagtgt aatgccagag gctattctga atgtcactga ataggcaaca
2041 ctctccctga attctaagtc catggtctgt tcaagggctt tttaggacat tggaacacca
2101 gtgaaggctt agctatgtca gaattcaatc ttaaaatgca cttataataa gataatatta
2161 aaagagagca catggatcta tacaccagac taactcggga atagaatatg agtacaaaat
2221 gggcagtatg cagctgctga actaaggctg tggtagatac cttttcaaag tttgcattcc
2281 cagattttta aaccaaggat cgtttcctaa ctctaatagg cagcaaaacg taagcaggtc
2341 tctaacaaaa acataacagt agattcctta tctaaattag gatctacaca attagttaat
2401 tgacaagaat tacaatgaat ataaaaagac ttgccaagat tggcgatctt aactcttaaa
2461 attatctaac aataagcata taggtaaggt acacaaactt tcatagctat aaggagctga
2521 cctgaaaggc caaaaacagt gtctctgaca aaagcatctt gtacattctc tgtaccagtc
2581 tttttgcctc atgagtcagc ttttttagtt gtttttattt taagttggca ccaggttggt
2641 actccttgct gcagcccatg gcggagatac gaagtttctt tatctgtttg taagtggctg
2701 ctctctgatt tctcttcttt tgtatactca acatagcttt ctggtcacca ctgtcagggc
2761 actcacaggt cacaggtcag cctgtcacat tggaagctag catgctcttg tagcattctg
2821 tggaaaaaac agaaacattc tcccttttcc ccatattaag tatctgaaca ggatcatggc
2881 aagtgccaat aagtggatcc tttttatctg tcctagacat cattatatct agtttgtttt
2941 ttttttgtaa ataaaaatgt gattttatgt gcacagggat ataattccta ccttctttgt
3001 ttttaaagaa ggtatagttt ttaaagtttt acaatacctt gtctttgaga attataaaat
3061 atctcagtaa catgtgtaac attaaattgt taacaaaaca tctcttggag gttttgaaaa
3121 taaaaatttt gaagc
//