LOCUS AK154403 3623 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
full-length enriched library, clone:F630027J10 product:programmed
cell death 1 ligand 1, full insert sequence.
ACCESSION AK154403
VERSION AK154403.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3623)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
Trust/MRC building Addenbrookes Hospital Cambridge) whose
assistance we gratefully acknowledge.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=F630027J10
FEATURES Location/Qualifiers
source 1..3623
/cell_type="NOD-derived CD11c +ve dendritic cells"
/clone="F630027J10"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:F630027J10"
/db_xref="MGI:3553309"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="NOD"
CDS 63..935
/codon_start=1
/note="programmed cell death 1 ligand 1 (MGD|MGI:1926446
GB|NM_021893, evidence: BLASTN, 99%, match=3575)"
/note="putative"
/protein_id="BAE32562.1"
/transl_table=1
/translation="MRIFAGIIFTACCHLLRAFTITAPKDLYVVEYGSNVTMECRFPV
ERELDLLALVVYWEKEDEQVIQFVAGEEDLKPQHSNFRGRASLPKDQLLKGNAALQIT
DVKLQDAGVYCCIISYGGADYKRITLKVNAPYRKINQRISVDPATSEHELICQAEGYP
EAEVIWTNSDHQPVSGKRSVTTSRTEGMLLNVTSSLRVNATANDVFYCTFWRSQPGQN
HTAELIIPELPATHPPQNRTHWVLLGSILLFLIVVSTVLLFLRKQVRMLDVEKCGVED
TSSKNRNDTQFEET"
regulatory 3600..3605
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 3623
/note="putative"
BASE COUNT 934 a 855 c 773 g 1061 t
ORIGIN
1 gatgccaggc tgcacttgca cgtcgcgggc cagtctcctc gcctgcagat agttcccaaa
61 acatgaggat atttgctggc attatattca cagcctgctg tcacttgcta cgggcgttta
121 ctatcacggc tccaaaggac ttgtacgtgg tggagtatgg cagcaacgtc acgatggagt
181 gcagattccc tgtagaacgg gagctggacc tgcttgcgtt agtggtgtac tgggaaaagg
241 aagatgagca agtgattcag tttgtggcag gagaggagga ccttaagcct cagcacagca
301 acttcagggg gagagcctcg ctgccaaagg accagctttt gaagggaaat gctgcccttc
361 agatcacaga cgtcaagctg caggacgcag gcgtttactg ctgcataatc agctacggtg
421 gtgcggacta caagcgaatc acgctgaaag tcaatgcccc ataccgcaaa atcaaccaga
481 gaatttccgt ggatccagcc acttctgagc atgaactaat atgtcaggcc gagggttatc
541 cagaagctga ggtaatctgg acaaacagtg accaccaacc cgtgagtggg aagagaagtg
601 tcaccacttc ccggacagag gggatgcttc tcaatgtgac cagcagtctg agggtcaacg
661 ccacagcgaa tgatgttttc tactgcacgt tttggagatc acagccaggg caaaaccaca
721 cagcggagct gatcatccca gaactgcctg caacacatcc tccacagaac aggactcact
781 gggtgcttct gggatccatc ctgttgttcc tcattgtagt gtccacggtc ctcctcttct
841 tgagaaaaca agtgagaatg ctagatgtgg agaaatgtgg cgttgaagat acaagctcaa
901 aaaaccgaaa tgatacacaa ttcgaggaga cgtaagcagt gttgaaccct ctgatcgtcg
961 attggcagct tgtggtctgt gaaagaaagg gcccatggga catgagtcca aagactcaag
1021 atggaacctg agggagagaa ccaagaaagt gttgggagag gagcctggaa caacggacat
1081 tttttccagg gagacactgc taagcaagtt gcccatcagt cgtcttggga aatggattga
1141 gggttcctgg cttagcagct ggtccttgca cagtgacctt ttcctctgct cagtgccggg
1201 atgagagatg gagtcatgag tgttgaagaa taagtgcctt ctatttattt tgagtctgtg
1261 tgttctcact ttgggcatgt aattatgact ggtgaattct gacgacatga tagatcttaa
1321 gatgtagtca ccaaactcaa ctgctgctta gcatcctccg taactactga tacaagcagg
1381 gaacacagag gtcacctgct tggtttgaca ggctcttgct gtctgactca aataatcttt
1441 atttttcagt cctcaaggct cttcgatagc agttgttctg tatcagcctt ataggtgtca
1501 ggtatagcac tcaacatctc atctcattac aatagcaacc ctcatcacca tagcaacagc
1561 taacctctgt tatcctcact tcatagccag gaagctgagc gactaagtca cttgcccaca
1621 gagtatcagc tctcagattt ctgttcttca gccactgtcc tttcaggata gaatttgtcg
1681 ttaagaaatt aatttaaaaa ctgattattg agtagcattg tatatcaatc acaacatgcc
1741 ttgtgcactg tgctggcctc tgagcataaa gatgtacgcc ggagtaccgg tcggacatgt
1801 ttatgtgtgt taaatactca gagaaatgtt cattaacaag gagcttgcat tttagagaca
1861 ctggaaagta actccagttc attgtctagc attacattta cctcatttgc tatccttgcc
1921 atacagtctc ttgttctcca tgaagtgtca tgaatcttgt tgaatagttc ttttattttt
1981 taaatgtttc tatttaaatg atattgacat ctgaggcgat agctcagttg gtaaaaccct
2041 ttcctcacaa gtgtgaaacc ctgagtctta tccctagaac ccacataaaa aacagttgcg
2101 tatgtttgtg catgcttttg atcccagcac tagggaggca gaggcaggca gatcctgagc
2161 tctcattgac cacccagcct agcctacatg gttagctcca ggcctacagg agctggcaga
2221 gcctgaaaaa cgatgcctag acacacacac acacacacac acacacacac acacacacac
2281 acaccatgta ctcatagacc taagtgcacc ctcctacaca tgcacacaca tacaattcaa
2341 acacaaatca acagggaatt gtctcagaat ggtccccaag acaaagaaga agaaaaacac
2401 caaaccagct ctattccctc agcctatcct ctctactcct tcctagaagc aactactatt
2461 gtttttgtat ataaatttac ccaacgacag ttaatatgta gaatatatat taaagtgtct
2521 gtcaatatat attatctctt tctttctttc ttcctttctt tctttctttc tttctttctt
2581 tctttctttc tttctttctt tctttcttcc ttccttcctt ccttccttcc ttccttcctt
2641 cctttctttc tttctttctt tttttctgtc tatctgtacc taaatggttg ctcactatgc
2701 attttctgtg ctcttcgccc tttttattta atgtatggat atttatgctg cttccagaat
2761 ggatctaaag ctctttgttt ctaggttttc tcccccatcc ttctaggcat ctctcacact
2821 gtctaggcca gacaccatgt ctgctgcctg aatctgtaga caccatttat aaagcacgta
2881 ctcaccgagt ttgtatttgg cttgttctgt gtctgattaa agggagacca tgagtcccca
2941 gggtacactg agttacccca gtaccaaggg ggagccttgt ttgtgtctcc atggcagaag
3001 caggcctgga gccattttgg tttcttcctt gacttctctc aaacacagac gcctcacttg
3061 ctcattacag gttctccttt gggaatgtca gcattgctcc ttgactgctg gctgccctgg
3121 aaggagccca ttagctctgt gtgagccctt gacagctact gcctctcctt accacagggg
3181 cctctaagat actgttacct agaggtcttg aggatctgtg ttctctgggg ggaggaaagg
3241 aggaggaacc cagaactttc ttacagtttt ccttgttctg tcacatgtca agactgaagg
3301 aacaggctgg gctacgtagt gagatcctgt ctcaaaggaa agacgagcat agccgaaccc
3361 ccggtggaac cccctctgtt acctgttcac acaagcttat tgatgagtct catgttaatg
3421 tcttgtttgt atgaagttta agaaaatatc gggttgggca acacattcta tttattcatt
3481 ttatttgaaa tcttaatgcc atctcatggt gttggattgg tgtggcactt tattcttttg
3541 tgttgtgtat aaccataaat tttattttgc atcagattgt caatgtattg cattaattta
3601 ataaatattt ttatttatta acc
//