LOCUS AK154339 990 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
full-length enriched library, clone:F630021M03 product:CD7
antigen, full insert sequence.
ACCESSION AK154339
VERSION AK154339.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 990)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
Trust/MRC building Addenbrookes Hospital Cambridge) whose
assistance we gratefully acknowledge.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=F630021M03
FEATURES Location/Qualifiers
source 1..990
/cell_type="NOD-derived CD11c +ve dendritic cells"
/clone="F630021M03"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:F630021M03"
/db_xref="MGI:3553187"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="NOD"
CDS 69..701
/codon_start=1
/note="CD7 antigen (MGD|MGI:88344 GB|NM_009854, evidence:
BLASTN, 100%, match=975)"
/note="putative"
/protein_id="BAE32525.1"
/transl_table=1
/translation="MTQQAVLALLLTLAGILPGPLDAQDVHQSPRLTIASEGDSVNIT
CSTRGHLEGILMKKIWPQAYNVIYFEDRQEPTVDRTFSGRINFSGSQKNLTITISSLQ
LADTGDYTCEAVRKVSARGLFTTVVVKEKSSQEAYRSQEPLQTSFSFPAAIAVGFFFT
GLLLGVVCSMLRKIQIKKLCASGIKESPCVVYEDMSYSNRKTPCIPNQYQ"
regulatory 971..976
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 990
/note="putative"
BASE COUNT 233 a 292 c 243 g 222 t
ORIGIN
1 gacagtgctc agtaatgtgt tgtagccaga gtggctgatt tggctcagat cacctggatt
61 tgggcgtcat gactcagcag gcagtgctgg ctttgctgct tacactggcc ggaatcctgc
121 ctggccccct ggatgcccaa gacgtacacc agtccccccg actcacgatt gcctctgagg
181 gggattctgt caacatcacc tgctctacaa gagggcacct ggaagggatc ttaatgaaga
241 agatctggcc tcaggcttac aatgtgattt actttgaaga ccggcaggag cccacagtag
301 acaggacctt ctcaggccga attaatttct ctggttccca gaagaacctg accatcacca
361 taagctccct ccagctggca gacactggag actacacctg cgaggctgtc aggaaagtca
421 gtgcccgtgg cttgttcacc acggttgtgg tgaaagaaaa atcatcccaa gaagcataca
481 gatcccagga acctctgcag acatcatttt ccttcccagc tgccattgct gtaggcttct
541 tcttcaccgg gctgctcctt ggggtggtgt gcagcatgct gaggaagata cagatcaaga
601 aactgtgtgc ctcagggatt aaggaatctc cgtgcgtagt gtatgaagac atgtcctaca
661 gcaaccgcaa gacgccatgc atccccaacc agtaccagtg aacccctctg cctgcagtcc
721 cccgtgcctt gtttcagcag agcttacagc agtcctgctg gcccccacac cccgcccaac
781 tccccagcac tcttcctgtg gtactcaaat tcccccttgg tgcttctggg tgggtgggat
841 tcctcctctg taagctcccc cacagggctc tgcaatctgt caccaaccct agccaggtac
901 cctgacatca gaaacaaagc ttgggggtgg ggaggtacct gccttggagc cgcctggcca
961 ggaaaaatta aataaacaca caaatacatt
//