LOCUS AK154329 3135 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
full-length enriched library, clone:F630021B16 product:CD80
antigen, full insert sequence.
ACCESSION AK154329
VERSION AK154329.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3135)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
Trust/MRC building Addenbrookes Hospital Cambridge) whose
assistance we gratefully acknowledge.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=F630021B16
FEATURES Location/Qualifiers
source 1..3135
/cell_type="NOD-derived CD11c +ve dendritic cells"
/clone="F630021B16"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:F630021B16"
/db_xref="MGI:3553168"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="NOD"
CDS 358..1281
/codon_start=1
/note="CD80 antigen (MGD|MGI:101775 GB|NM_009855,
evidence: BLASTN, 98%, match=1205)"
/note="putative"
/protein_id="BAE32518.1"
/transl_table=1
/translation="MACNCQLMQDTPLLKFPCPRLILLFVLLIRLSQVSSDVDEQLSK
SVKDKVLLPCRYNSPHEDESEDRIYWQKHDKVVLSVIAGKLKVWPEYKNRTLYDNTTY
SLIILGLVLSDRGTYSCVVQKKERGTYEVKHLALVKLSIKADFSTPNITESGNPSADT
KRITCFASGGFPKPRFSWLENGRELPGINTTISQDPESELYTISSQLDFNTTRNHTIK
CLIKYGDAHVSEDFTWEKPPEDPPDSKNTLVLFGAGFGAVITVVVIVVIIKCFCKHRS
CFRRRNEASRETNNSLTFGPEEALAEQTVFL"
regulatory 3121..3126
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 3135
/note="putative"
BASE COUNT 909 a 698 c 645 g 883 t
ORIGIN
1 gactcactga ggaacttcac tggccacggg gctctcacag agaacgcagc cttcagggga
61 gaacaaaaac aagaacgggg tgtttgtcag gtgatttttc ttccacggcc cctgtgcccc
121 acggcctgca ctgatcaacc tggacccacc actgttgtga aactcaacct tcaaagacac
181 tctgttccat ttctgtggac taataggatc atctttagca tctgccgggt ggatgccatc
241 caggcttctt tttctacatc tctgtttctc gatttttgtg agcctaggag gtgcctaagc
301 tccattggct ctagattcct ggctttcccc atcatgttct ccaaagcatc tgaagctatg
361 gcttgcaatt gtcagttgat gcaggataca ccactcctca agtttccatg tccaaggctc
421 attcttctct ttgtgctgct gattcgtctt tcacaagtgt cttcagatgt tgatgaacaa
481 ctgtccaagt cagtgaaaga taaggtattg ctgccttgcc gttacaactc tcctcatgaa
541 gatgagtctg aagaccgaat ctactggcaa aaacatgaca aagtggtgct gtctgtcatt
601 gctgggaaac taaaagtgtg gcccgagtat aagaaccgga ctttatatga caacactacc
661 tactctctta tcatcctggg cctggtcctt tcagaccggg gcacatacag ctgtgtcgtt
721 caaaagaagg aaagaggaac gtatgaagtt aaacacttgg ctttagtaaa gttgtccatc
781 aaagctgact tctctacccc caacataact gagtctggaa acccatctgc agacactaaa
841 aggattacct gctttgcttc cgggggtttc ccaaagcctc gcttctcttg gttggaaaat
901 ggaagagaat tacctggcat caatacgaca atttcccagg atcctgaatc tgaattgtac
961 accattagta gccaactaga tttcaatacg actcgcaacc acaccattaa gtgtctcatt
1021 aaatatggag atgctcacgt gtcagaggac ttcacctggg aaaaaccccc agaagaccct
1081 cctgatagca agaacacact tgtgctcttt ggggcaggat tcggcgcagt aataacagtc
1141 gtcgtcatcg ttgtcatcat caaatgcttc tgtaagcaca gaagctgttt cagaagaaga
1201 aatgaggcaa gcagagaaac aaacaacagc cttaccttcg ggcctgaaga agcattagct
1261 gaacagaccg tcttccttta gctcttctct gtccatgtgg gatacatggt attatgtggc
1321 tcatgagggc tcatctacca tttgcaactg acctcttctg caaaggactt cagaaaccta
1381 gcactaccct ggctctgcaa acacggttct ctaggtgaag cctctgcagt ggtttgcaga
1441 agtactcaga cgaatgaacc acagtagttc tgctgattct gaggacgtag agactgaatt
1501 ctttggaaag gacattaggg acgacttgca catttgcttg cacatcacac acgcacacac
1561 actctctcga taccttagga tagggttcta ccctgttgct cagtgacaaa gaatcactct
1621 gtggcggagg caggcttcaa gcttgcagca atcctcctgc accagtttcc tgagtgccag
1681 acttccaggt gtgagctatg gcacttagca gaacactagc tgaatcaatg aagacactga
1741 ggttccaaga gggaacctga attatgaagg tgagtcagaa tccagatttc ctggctctac
1801 cactcttaac ctgtatctgt tagaccccaa gctctgagct catagacaag ctaatttaaa
1861 atgcttttaa taagcagaag gctcagttag tacggggttc aggatactgc ttactggcaa
1921 tatttgacta gcctctattt tgtttgtttt ttaaggccta ctgactgtag tgtaatttgt
1981 aggaaacatg ctgctatata tacccatttg agggtaataa aaatgttggt aattctcagc
2041 cagcactttc caggtatttc cctttttatc cttcatgtcc ttaaaagaaa ccagagtcaa
2101 ccagaattaa ctgcttttgt tgtctaagat gaatgtatgc cttttatact tcaaagcaaa
2161 agtcaagttg gaggcacagt tcgtaactta ctcgttcata ttggacttat aatgaatgtc
2221 tttaggcaac tttgcccttt tacacagttc ttgatatagt tcttatttca aatgagatta
2281 tttactgagt aatcatctgt cctcacataa acaacttaag tgatactagc cctacacaga
2341 acttcctcag attcctggaa gtggcttttg ctctttggta tagatctgct acaatggaat
2401 tgaaaaataa aatgtacgtt agacacactt gcctgtaatc cctgcactca gtatactgag
2461 gctgaagaac tgaattccag gtagcatggc ctggatagta agaccctgtc tgaaacccac
2521 tcctccatca atgtgcccca aagaaatgga aaacaagaag cagctaactg ctgcttctat
2581 actgaaggtt cccttttctc tgagatggta atccacaacc tacaagacca gcagtgagct
2641 taagtcaaga caatcagata ttctagtctg aatttatagg aggacatcga atggcagcca
2701 aacttctcaa cgggaccaga gtctgttgta ctgaccagga aacaggtcca tttttatgtg
2761 ggtgctctca gaaccaagcc actaaagaaa acaaagtggt ggactgacaa aaagttaaca
2821 agacattgaa agccacacca aagaaaaacc aggagggcgg gggaaggaag ctgcagcatt
2881 taatcagtgg tgatcgggct caccacgaga cttcaaaaac agttagtgac aaaaaggatc
2941 aatcaaaggg aaacttagaa aagtaagtta tattaaatta ttgattacat ttgataagcg
3001 ttagttgttt tttttttaag atttatactt tttattattc aggtgttttc ttatgctaaa
3061 gtaattttta aaaactgttt agttttataa tttttaaaga tttttgccta tgttattata
3121 aataaaacaa tgaac
//