LOCUS AK154064 1577 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
full-length enriched library, clone:E430031K17 product:CD3
antigen, delta polypeptide, full insert sequence.
ACCESSION AK154064
VERSION AK154064.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1577)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=E430031K17
FEATURES Location/Qualifiers
source 1..1577
/cell_type="thymic cells"
/clone="E430031K17"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:E430031K17"
/db_xref="MGI:3551581"
/db_xref="taxon:10090"
/dev_stage="2 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="NOD"
/tissue_type="thymus"
CDS 63..584
/codon_start=1
/note="CD3 antigen, delta polypeptide (MGD|MGI:88331
GB|X02339, evidence: BLASTN, 100%, match=569)"
/note="putative"
/protein_id="BAE32350.1"
/transl_table=1
/translation="MEHSGILASLILIAVLPQGSPFKIQVTEYEDKVFVTCNTSVMHL
DGTVEGWFAKNKTLNLGKGVLDPRGIYLCNGTEQLAKVVSSVQVHYRMCQNCVELDSG
TMAGVIFIDLIATLLLALGVYCFAGHETGRPSGAAEVQALLKNEQLYQPLRDREDTQY
SRLGGNWPRNKKS"
regulatory 1549..1554
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 1577
/note="putative"
BASE COUNT 381 a 370 c 421 g 405 t
ORIGIN
1 ggctaaccct ggctgatcat cctgtggctt gcctctattt gttgcatgat tccctctgga
61 agatggaaca cagcgggatt ctggctagtc tgatactgat tgctgttctc ccccaaggga
121 gccccttcaa gatacaagtg accgaatatg aggacaaagt atttgtgacc tgcaatacca
181 gcgtcatgca tctagatgga acggtggaag gatggtttgc aaagaataaa acactcaact
241 tgggcaaagg cgttctggac ccacgaggga tatatctgtg taatgggaca gagcagctgg
301 caaaggtggt gtcttctgtg caagtccatt accgaatgtg ccagaactgt gtggagctag
361 actcgggcac catggctggt gtcatcttca ttgacctcat cgcaactctg ctcctggctt
421 tgggcgtcta ctgctttgca ggacatgaga ccggaaggcc ttctggggct gctgaggttc
481 aagcactgct gaagaatgag cagctgtatc agcctcttcg agatcgtgaa gatacccagt
541 acagccgtct tggagggaac tggccccgga acaagaaatc ttaagatgga ggtttctcaa
601 agtgccatag caacggcgcc ttcccctgtg atcaaccaat aaagacgttt ccttccgtcg
661 gcaggcgcct gtgttttcca aagcatggat tgagagttgt cttagcttgg ctgagttctg
721 cccacccgtg gcccctcact tctggcttcc tctcctcaga cccagacagg cagtacgagg
781 gacagcttcc catcctggcc ccttggcatt tctaaccctg tgggtttcct gtgggcaggg
841 tcagcccagc cactctgctt cattgcctgt tggttccagt ccctatcata acaacttccg
901 ggattttgct gccttaccac agcccaaagc aggctgtggt gtttagaagc tgagccacaa
961 agaagtttcc atgacatcat gaatgggggt ggcagagaag aatattgggg ctcaaagggt
1021 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgaga gagagagaga gagagagaga
1081 gagagagaga cagacagaga gacagagaga cagaaagaca gaaagacaga aagacagaga
1141 cagagctgtc aagaattttc ttctcacttc gtgggttctg gggattgtac taaggtcatg
1201 aggcttgtgt ggcaagcacc cttacccact gagccatctt gcctgccctc atcctcaaat
1261 taattaaaaa taaagaacat gatgaattcc aggtgtttct ggcagtgttg cctgactcac
1321 acggtggaaa ttcattcagc tttggtctcg aacagtgctt gctctaaggc gcttgtccac
1381 ggccagacca cccagcagca gctgagaact gccaggcttg agacttgtgt gctgtgctat
1441 gaactgcact gttcttattg tacagtttcc tgttggtgtg gaaacatagt ggtttcctat
1501 ggaaacaaag acttctaata ttttcccatc ctccctcagc atgtaagtat taaattagta
1561 caccccggtg ctgtgtt
//