LOCUS AK153966 3086 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
full-length enriched library, clone:E430014F19 product:CD4
antigen, full insert sequence.
ACCESSION AK153966
VERSION AK153966.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3086)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=E430014F19
FEATURES Location/Qualifiers
source 1..3086
/cell_type="thymic cells"
/clone="E430014F19"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:E430014F19"
/db_xref="MGI:3551318"
/db_xref="taxon:10090"
/dev_stage="2 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="NOD"
/tissue_type="thymus"
CDS 170..1543
/codon_start=1
/note="CD4 antigen (MGD|MGI:88335 GB|BC039137, evidence:
BLASTN, 99%, match=3065)"
/note="putative"
/protein_id="BAE32284.1"
/transl_table=1
/translation="MCRAISLRRLLLLLLQLSQLLAVTQGKTLVLGKEGESAELPCES
SQKKITVFTWKFSDQRKILGQHGKGVLIRGGSPSQFDRFDSKKGAWEKGSFPLIINKL
KMEDSQTYICELENRKEEVELWVFKVTFSPGTSLLQGQSLTLTLDSNSKVSNPLTECK
HKKGKVVSGSKVLSMSNLRVQDSDFWNCTVTLDQKKNWFGMTLSVLGFQSTAITAYKS
EGESAEFSFPLNFAEENGWGELMWKAEKDSFFQPWISFSIKNKEVSVQKSTKDLKLQL
KETLPLTLKIPQVSLQFAGSGNLTLTLDKGTLHQEVNLVVMKVAQLNNTLTCEVMGPT
SPKMRLTLKQENQEARVSEEQKVVQVVAPETGLWQCLLSEGDKVKMDSRIQVLSRGVN
QTVFLACVLGGSFGFLGFLGLCILCCVRCRHQQRQAARMSQIKRLLSEKKTCQCPHRM
QKSHNLI"
BASE COUNT 774 a 844 c 767 g 701 t
ORIGIN
1 gattcattta cgaacatctg tgaaggcaaa gcaagactct cttcttcact aggtacctgt
61 ttgcaaagtc tcgagccctc atatacacac acctgtgcaa gaagcagagt gaaggaagga
121 ctggccagag gctcagattc ccaaccaaca agagctcaag gagaccacca tgtgccgagc
181 catctctctt aggcgcttgc tgctgctgct gctgcagctg tcacaactcc tagctgtcac
241 tcaagggaag acgctggtgc tggggaagga aggggaatca gcagaactgc cctgcgagag
301 ttcccagaag aagatcacag tcttcacctg gaagttctct gaccagagga agattctggg
361 gcagcatggc aaaggtgtat taattagagg aggttcgcct tcgcagtttg atcgttttga
421 ttccaaaaaa ggggcatggg agaaaggatc gtttcctctc atcatcaata aacttaagat
481 ggaagactct cagacttata tctgtgagct ggagaacagg aaagaggagg tggagttgtg
541 ggtgttcaaa gtgaccttca gtccgggtac cagcctgttg caagggcaga gcctgaccct
601 gaccttggat agcaactcta aggtctctaa ccccttgaca gagtgcaaac acaaaaaggg
661 taaagttgtc agtggttcca aagttctctc catgtccaac ctaagggttc aggacagcga
721 cttctggaac tgcaccgtga ccctggacca gaaaaagaac tggttcggca tgacactctc
781 agtgctgggt tttcagagca cagctatcac ggcctataag agtgagggag agtcagcgga
841 gttctccttc ccactcaact ttgcagagga aaacgggtgg ggagagctga tgtggaaggc
901 agagaaggat tctttcttcc agccctggat ctccttctcc ataaagaaca aagaggtgtc
961 cgtacaaaag tccaccaaag acctcaagct ccagctgaag gaaacgctcc cactcaccct
1021 caagataccc caggtctcgc ttcagtttgc tggttctggc aacctgactc tgactctgga
1081 caaagggaca ctgcatcagg aagtgaacct ggtggtgatg aaagtggctc agctcaacaa
1141 tactttgacc tgtgaggtga tgggacctac ctctcccaag atgagactga ccctgaagca
1201 ggagaaccag gaggccaggg tctctgagga gcagaaagta gttcaagtgg tggcccctga
1261 gacagggctg tggcagtgtc tactgagtga aggtgataag gtcaagatgg actccaggat
1321 ccaggtttta tccagagggg tgaaccagac agtgttcctg gcttgcgtgc tgggtggctc
1381 cttcggcttt ctgggtttcc ttgggctctg catcctctgc tgtgtcaggt gccggcacca
1441 acagcgccag gcagcacgaa tgtctcagat caagaggctc ctcagtgaga agaagacctg
1501 ccagtgcccc caccggatgc agaagagcca taatctcatc tgagggccta ggccccacct
1561 gcagcccacc acctgcgtcc tgtctcatcg cccgaggcct ggggaccaga tgaatgtagc
1621 agacacgctg cctccggcct tctgctctcc tcttccacaa ccggccacgg tttccctccc
1681 tctgttccca agcctgtctg tctgcagagc ttgccctctg cgtttcagac actcaagcac
1741 accccatcag cttatttatt cttcgctgct gcctttctgc cagagcctcg gcccttctcg
1801 gactaaggtc ctggaacctt tttccagctg tctgcttgga tcaaagggca gtgtatagca
1861 cctggcacgg atggtgggac tggtgtctgg aaatacacag cacagtttac gagagggctc
1921 tgggaccaag ctgagtgggg cagggagggc cgggaggttg tgcatgtcac acatgaagca
1981 tgtcaggggc aaatgaagac tgagaggctg cgggagtcag cctcagcttc ccatgatgcc
2041 tgcttctctt ttgaatttgc aagaccagac tcacattcta accagtgcac caacacacat
2101 ccaagccaca cacctgtcca tatatccaaa cagcatatct taattcataa gccactttaa
2161 tgtcccaggc attcgaccct tacaaaaacc ttacaagtgg atgagcggta aaaagcctca
2221 tgaactgagt ggaaggagag gattaactct tgaaagttgt cccctatgta tgtaccatga
2281 ccctcatgtg tacacaacac acacacacac acacacacat acacacacga acacacgcat
2341 gttgcacaca tgcatgcacg ctgaaatcct agcaagctga cagtgatgac taagatggca
2401 gagataacca gtcatcccta gtgaaatgga acttggttga atgactaccc aaggttaccc
2461 agctaacaag tgctgatgtc agggccaacc cagggctcct gatccctaga gccaagccac
2521 tacatggaac acagggatga ataccacaca gatctctgga gctagttcca ggccctcggt
2581 atacacacac acacacacac acacacacac tggagcgcag cccctggcag agatcttgag
2641 aggatggagg agccattctg gtttcaaatc cctccttgat cactgctgtt ctcacccccc
2701 cctccttccc ccaaaaccct agttctctta gagtgaggct gggagagatg cacagagacc
2761 tgccgcagtg tgtgcagagc ctgggaagtg gaccatgctg gggtccttta tggagagagc
2821 attgtggcag gtggctgtgc cttccatcca ggaggtcagg ggtctaaggg ctctccctga
2881 gagtcttgat ctgtttctca tagatccaca gcctcctctg cctctgtcgt ttgcctgctt
2941 cagcacttcc ttcccctttt ttcctctttt cttcccagct ggcctcttct agaaacatcc
3001 cttccccact tctcttcatt attcacttct tatttttgcc cactccccac tcctgcttcc
3061 tgagctgaca gaaaaataaa ggctat
//