LOCUS AK145664 2623 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus blastocyst blastocyst cDNA, RIKEN full-length
enriched library, clone:I1C0027J19 product:Immune costimulatory
protein B7-H4, full insert sequence.
ACCESSION AK145664
VERSION AK145664.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2623)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=I1C0027J19
FEATURES Location/Qualifiers
source 1..2623
/cell_type="blastocyst"
/clone="I1C0027J19"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:I1C0027J19"
/db_xref="MGI:3564247"
/db_xref="taxon:10090"
/dev_stage="blastocyst"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
CDS 101..952
/codon_start=1
/note="Immune costimulatory protein B7-H4
(UniProt|Q7TSP5, evidence: FASTY, 100%ID, 100%length,
match=849)"
/note="putative"
/protein_id="BAE26576.1"
/transl_table=1
/translation="MASLGQIIFWSIINIIIILAGAIALIIGFGISGKHFITVTTFTS
AGNIGEDGTLSCTFEPDIKLNGIVIQWLKEGIKGLVHEFKEGKDDLSQQHEMFRGRTA
VFADQVVVGNASLRLKNVQLTDAGTYTCYIRTSKGKGNANLEYKTGAFSMPEINVDYN
ASSESLRCEAPRWFPQPTVAWASQVDQGANFSEVSNTSFELNSENVTMKVVSVLYNVT
INNTYSCMIENDIAKATGDIKVTDSEVKRRSQLQLLNSGPSPCVFSSAFVAGWALLSL
SCCLMLR"
BASE COUNT 712 a 676 c 590 g 645 t
ORIGIN
1 gtgagtcaca acacccagga gggcagcagc aggcaggcag ctccactcac caaaatctgg
61 ccccacacac agcaggactg tgggaaggaa ctccctctcc atggcttcct tggggcagat
121 catcttttgg agtattatta acatcatcat catcctggct ggggccatcg cactcatcat
181 tggctttggc atttcaggca agcacttcat cacggtcacg accttcacct cagctggaaa
241 cattggagag gacgggaccc tgagctgcac ttttgaacct gacatcaaac tcaacggcat
301 cgtcatccag tggctgaaag aaggcatcaa aggtttggtc cacgagttca aagaaggcaa
361 agacgacctc tcacagcagc atgagatgtt cagaggccgc acagcagtgt ttgctgatca
421 ggtggtagtt ggcaatgctt ccctgagact gaaaaacgtg cagctcacgg atgctggcac
481 ctacacatgt tacatccgca cctcaaaagg caaagggaat gcaaaccttg agtataagac
541 cggagccttc agtatgccag agataaatgt ggactataat gccagttcag agagtttacg
601 ctgcgaggct cctcggtggt tcccccagcc cacagtggcc tgggcatctc aagtcgacca
661 aggagccaat ttctcagaag tctccaacac cagctttgag ttgaactctg agaatgtgac
721 catgaaggtc gtatctgtgc tctacaatgt cacaatcaac aacacatact cctgtatgat
781 tgaaaacgac attgccaaag ccaccgggga catcaaagtg acagattcag aggtcaaaag
841 gcgaagtcag ctgcagttgc tgaactctgg gccttccccg tgtgtttttt cttctgcctt
901 tgtggctggc tgggcactcc tatctctctc ctgttgcctg atgctaagat gaggggccct
961 ggctacacaa aagcatgcaa cgttgctggt ccaacagaat cccggagaac tacagaaata
1021 ttttcctcaa gacatgacct agttttatat ttctagaaga agatgaaatc atgtctagaa
1081 gtctggagag agcagacagg aacaagatgt ggaaggaaaa caaaagtaac ccacagacac
1141 ccccgatcgg aacaagatgg acctagaaaa taattcaacc aaactagagt atactaagtg
1201 tgctgttaca atgtgtgtag ggtaggtgtc ctcccacatc tcaggggcct cccctggtcc
1261 accagctcct gagttaggat gggctgttat gatgtcactc tgaaggttcc tggatggttc
1321 ctactgccat atactcattt tatattcagc acattaaacc atagtgaatg ctatgaaaag
1381 ctgctaatca gctgccactc cgagattcgg aggtggcaac gtctgagtga caggtccagt
1441 gattcgcttc tccttaggat gcttttacaa gctctttggc gtctcctccc acctggcaaa
1501 tgccaaatgc ataggggagg gtgatcatca ttctagggca aacaaaatag ttgagggatg
1561 ctgatttccc aaatcatccg aatcacttct cccttgagca aacaagcgcc ctgttatttc
1621 tcaaatgctg ctttgtgaat cagtccaggg caaggcgctc tcctcatccc gctatgtggc
1681 cttaagtcat cgtaaggttt gaagtttcta ctttcgatcc tgcatggaga gctataatct
1741 cagctccccc gcccccccca cacacacctc tgcacacaca ccccccccca acactgggag
1801 taaaccagga tgatgtccgt cttctcattc cccatgtgac cgttggcagt gtagagagac
1861 tgattgtcac agctaaagga agagggacaa cagggtcact ggtgtctaca gagattatat
1921 tctacgtgtc tcactgaatt tacacaactc caagtgccaa ccacatcaag gtcaggaaat
1981 cctgaactgg aataagaaag acccagaaga tgaatgtgaa cagatccatt tgcttcccga
2041 cagtgggcac agacttcagt ctctggctac tgttccaaga cccagggctc tgcaattgtg
2101 tgacatcctt cagtgaaccc acatgggaaa ttctccatgg aattatcttc agcccactgt
2161 acttctgaat ccctcttcct tccttctgtg ccacacagca agtctggctt aaatgctgcc
2221 tgatctccat ttcaagtttt ctgcctctgg atttttagat ctcaagacca tggacgaaac
2281 atcagttaca gcaacaaaag tgaattttcc gtgcagagac ttctaggggt tctgtttgtt
2341 ttcagggtgc tagagatcac actcagatgc tcatatatgt taggtaaatg ttctcccact
2401 gagttacagc ccagctcaca cagagacttc taaaagaaaa tacggccatg ctctttgaaa
2461 tggagcattg agggatgaag tttggatggc gaagaaaact tctcaccagc tctctcccca
2521 cattcgtgcc aagcactgcc tccctagact tcgggtcacc atatctgtac tacgttttga
2581 tacagaaggc tcgagaccat tcaagagaat tatttagtac acg
//