LOCUS AK141111 1730 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
enriched library, clone:C230055L10 product:programmed cell death 1
ligand 2, full insert sequence.
ACCESSION AK141111
VERSION AK141111.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1730)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=C230055L10
FEATURES Location/Qualifiers
source 1..1730
/clone="C230055L10"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:C230055L10"
/db_xref="MGI:3546930"
/db_xref="taxon:10090"
/dev_stage="0 day neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="cerebellum"
CDS 327..1070
/codon_start=1
/note="programmed cell death 1 ligand 2 (MGD|MGI:1930125
GB|AF142780, evidence: BLASTN, 100%, match=780)"
/note="putative"
/protein_id="BAE24564.1"
/transl_table=1
/translation="MLLLLPILNLSLQLHPVAALFTVTAPKEVYTVDVGSSVSLECDF
DRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRC
LVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSV
PANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSRMEPKVP
RTWPLHVFIPACTIALIFLAIVIIQRKRI"
BASE COUNT 432 a 442 c 415 g 441 t
ORIGIN
1 gaggatacgg atgattgcca gtgtgggtgg ctgttgctgt ccaccctgct ctccagaaaa
61 ggccatgcga ggagcaagaa gagcagctca tttgaattca gaaagagtgt cgtcttcctc
121 cttgctgtgc ataataagct cttctccaga aaagcaaccc gcagcctctc ttcttgtctt
181 tgctcctcca ttgtcacttg catctcccat aagattggat tctgagtcat taccctgctc
241 ttgggatgag ttaaactctc agagactgaa aaagcgcgcg cggagccctg agactctcaa
301 ttgtctgttt cagattgaca cagaccatgc tgctcctgct gccgatactg aacctgagct
361 tacaacttca tcctgtagca gctttattca ccgtgacagc ccctaaagaa gtgtacaccg
421 tagacgtcgg cagcagtgtg agcctggagt gcgattttga ccgcagagaa tgcactgaac
481 tggaagggat aagagccagt ttgcagaagg tagaaaatga tacgtctctg caaagtgaaa
541 gagccaccct gctggaggag cagctgcccc tgggaaaggc tttgttccac atccctagtg
601 tccaagtgag agattccggg cagtaccgtt gcctggtcat ctgcggggcc gcctgggact
661 acaagtacct gacggtgaaa gtcaaagctt cttacatgag gatagacact aggatcctgg
721 aggttccagg tacaggggag gtgcagctta cctgccaggc tagaggttat cccctagcag
781 aagtgtcctg gcaaaatgtc agtgttcctg ccaacaccag ccacatcagg acccccgaag
841 gcctctacca ggtcaccagt gttctgcgcc tcaagcctca gcctagcaga aacttcagct
901 gcatgttctg gaatgctcac atgaaggagc tgacttcagc catcattgac cctctgagtc
961 ggatggaacc caaagtcccc agaacgtggc cacttcatgt tttcatcccg gcctgcacca
1021 tcgctttgat cttcctggcc atagtgataa tccagagaaa gaggatctag gggaagctgt
1081 attacggaag aagatctgga cctgcggtct tgggagttgg aaggatctga tgggaaaccc
1141 tcaagagact tctggactca aagtgagaat cttgcaggac ctgccatttg cacttttgaa
1201 ccctttggac ggtgacccag ggctccgaag aggagcttgt aagactgaca atcttccctc
1261 tgtctcaaga ctctctgaac agcaagaccc caatggcact ttagacttac ccctgggatc
1321 ctggacccca gtgagggcct aaggctccta atgactttca gggtgagaac aaaaggaatt
1381 gctctccgcc ccacccccac ctcctgcttt ccgcagggag acatggaaat tcccagttac
1441 taaaatagat tgtcaataga gttatttata gccctcattt cctccgggga cttggaagct
1501 tcagacaggg tttttcataa acaaagtcat aactgatgtg ttttacagca tcctagaatc
1561 ctggcagcct ctgaagttct aattaactgg aagcatttaa gcaacacgtt aagtaccccc
1621 actgtggtat ttgtttctac ttttctgttt ttaaagtgtg agtcacaagg taattgttgt
1681 aacctgtgat atcactgttt cttgtgtctc ttctttcaac tacatctttt
//