LOCUS AK137937 2956 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130041G13 product:CD8 antigen, alpha chain, full insert sequence. ACCESSION AK137937 VERSION AK137937.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2956) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=A130041G13 FEATURES Location/Qualifiers source 1..2956 /clone="A130041G13" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:A130041G13" /db_xref="MGI:3541535" /db_xref="taxon:10090" /dev_stage="16 days neonate" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="thymus" CDS <1..721 /codon_start=2 /note="CD8 antigen, alpha chain (MGD|MGI:88346 GB|AK037467, evidence: BLASTN, 99%, match=2277)" /note="putative" /note="start codon is not identified" /protein_id="BAE23516.1" /transl_table=1 /translation="LSLNLLLLGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLV CEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN KYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTG TSQPQRPEDCRPRGSVKGTGLDFACDIYIWAPLAGICVALLLSLIITLICYHRSRKRV CKCPRPLVRQEGKPRPSEKIV" BASE COUNT 814 a 685 c 675 g 782 t ORIGIN 1 gctgtcgctg aacctgctgc tgctgggtga gtcgattatc ctggggagtg gagaagctaa 61 gccacaggca cccgaactcc gaatctttcc aaagaaaatg gacgccgaac ttggtcagaa 121 ggtggacctg gtatgtgaag tgttggggtc cgtttcgcaa ggatgctctt ggctcttcca 181 gaactccagc tccaaactcc cccagcccac cttcgttgtc tatatggctt catcccacaa 241 caagataacg tgggacgaga agctgaattc gtcgaaactg ttttctgcca tgagggacac 301 gaataataag tacgttctca ccctgaacaa gttcagcaag gaaaacgaag gctactattt 361 ctgctcagtc atcagcaact cggtgatgta cttcagttct gtcgtgccag tccttcagaa 421 agtgaactct actactacca agccagtgct gcgaactccc tcacctgtgc accctaccgg 481 gacatctcag ccccagagac cagaagattg tcggccccgt ggctcagtga aggggaccgg 541 attggacttc gcctgtgata tttacatctg ggcacccttg gccggaatct gcgtggccct 601 tctgctgtcc ttgatcatca ctctcatctg ctaccacagg agccgaaagc gtgtttgcaa 661 atgtcccagg ccgctagtca gacaggaagg caagcccaga ccttcagaga aaattgtgta 721 aaatggcacc gccaggaagc tacaactact acatgacttc agagatctct tcttgcaaga 781 ggccaggccc tcctttttca agtttcctgc tgtcttatgt attgccctct gtattgtttt 841 agtaggggtg tgatggggac agttcctttt tctttatgaa ttctctttga cacaaagcat 901 acttgtatgc atacaatggg agtaatgagc agactgtaac accagagcta gttccagttt 961 cggggtccat gtcgctggtg gcctcagcac ccacttgata taaatctcct gtctgcccat 1021 catatagaag aagctgaaga tcagaggtgg aaacagcagg atctgtagac ccggagagaa 1081 cccaagctag aggaaccctc actgactggt gcagggatct cacccccatc ccctgagctc 1141 tctgtttagg tatgtgtctt tagtatagca tgcttgtgcc tcaaactgca aggaagcaag 1201 tggtatgaat ctgtgatctg ctcagctctg gctgtgagca tcagatgtaa caaatcaaag 1261 tcaggagaac tgcctttagc ggtgcacctg gacatcagag ccccttgtaa gaactgggaa 1321 attgctggca gtctagtgga gcggtacggt aaatctggaa aacactcccc tctgtcactg 1381 aaggctgtag tagaatccaa ttaaagctat tcaaaccact gccgcagacc ctctgggtcc 1441 ctgtgtctgc gtggaatggg tctctcgagc aggtgggcaa agcgtaggat taaactgaca 1501 aacagatgca cacaggagag gcgttgaatc tgaatgtaat gtcaggtcga acctcggact 1561 ttttataata cagaaaaaat tccaggggcg atatgtcaca ccagacaagg tacactgaaa 1621 tttaccagat acaagagaat gacttcgaaa ggaatttgca ggaactagat aaatgtttac 1681 aatagagatt atcagccctg cctaggatca tcagcctagt gccaggtaag aatttcacac 1741 tttagtgtta aaagcaccag ggggtaatta ctcttggcag gcctcaagaa taatgtagtg 1801 tcacggaccc ctaaattcct aggccttgtt aaatcttatc ttgtctggag aatccccatt 1861 tatcaggaga gtatctcaac ttgctcttgg catggaatgt agcctgtact aaagattttt 1921 atctcagtga gattcccagg ctctttctgc agaccagatg agctaatggc cttgtttatt 1981 gtaatgctta attagttact gaataggtta aactccttgc tgttatctgg gatcttggaa 2041 caatgggggc tttagctatg tcagaattca atcttaaaag gcacttacaa tagggtaatg 2101 cttaatagag ggcacatgga tccatacact agactaacgc gggagtggaa aattaattta 2161 tggtttagag ggaacgccag actccaggag ggaatttctg tgaaactctt ttccttgtgg 2221 gcagcttcca agcttccgct tgtcaaactg acccaactgg agagcgtggc tttcaccaga 2281 ctccaggagg gagctttcgt gaaactcttc ctcatgagat agcttccaag ctttcgcctg 2341 tcaagctgac tccaccagag tgcgtggcaa accaccactg tgaaattcct gtagaattat 2401 gattctctct gctcttggac agcagagggt gaggtttgac agatacgact caggcatcag 2461 agaagctgca ggcaggccct ctcccatgtc taaacatgag acttggatgt gctcctggga 2521 tcaccagcat gctttatact ctataaacat agaatccttg gagaacattc cttagcaccc 2581 ccggaaggca gatgtaaaga ggcagactag acgtggagga agacgctgac tgtcaaaact 2641 gctgccccag agctaatttc ctctcacagt accatataag taacaaataa taggcaataa 2701 aaacctgaag gaactaagag tcacccatgg tcctctatct attgttacta tcattttata 2761 cctgattatt tcctatgcat atatatgtaa gaaagattac accctgggtt ttaaaacaca 2821 acagtttttg taagcagatt tagtaaataa acatgtatat tatcatttaa tggttaaata 2881 gcatttcata gtttggttgt atccatttag tattaaattg tttcaaactt ccccctacta 2941 ttacactact aaactt //