LOCUS       AK137937                2956 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
            enriched library, clone:A130041G13 product:CD8 antigen, alpha
            chain, full insert sequence.
ACCESSION   AK137937
VERSION     AK137937.1
KEYWORDS    HTC_FLI; HTC; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2956)
  AUTHORS   Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
            Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
            Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
            Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
            Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
            Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
            Contact:Yoshihide Hayashizaki
            The Institute of Physical and Chemical Research (RIKEN), Omics
            Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
            Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
            URL    :http://www.osc.riken.jp/
REFERENCE   2
  AUTHORS   
  CONSRTM   The FANTOM Consortium, Riken Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The Transcriptional Landscape of the Mammalian Genome
  JOURNAL   Science 309, 1559-1563 (2005)
REFERENCE   3
  AUTHORS   
  CONSRTM   RIKEN Genome Exploration Research Group and Genome Science Group
            (Genome Network Project Core Group) and the FANTOM Consortium
  TITLE     Antisense Transcription in the Mammalian Transcriptome
  JOURNAL   Science 309, 1564-1566 (2005)
REFERENCE   4
  AUTHORS   
  CONSRTM   The FANTOM Consortium and the RIKEN Genome Exploration Research
            Group Phase I and II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420, 563-573 (2002)
REFERENCE   5
  AUTHORS   
  CONSRTM   The RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409, 685-690 (2001)
REFERENCE   6
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
REFERENCE   7
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10, 1617-1630 (2000)
REFERENCE   8
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
            Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
            Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
            Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
            Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
            Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
            Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
            Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system-384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10, 1757-1771 (2000)
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=A130041G13
FEATURES             Location/Qualifiers
     source          1..2956
                     /clone="A130041G13"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /db_xref="FANTOM_DB:A130041G13"
                     /db_xref="MGI:3541535"
                     /db_xref="taxon:10090"
                     /dev_stage="16 days neonate"
                     /mol_type="mRNA"
                     /organism="Mus musculus"
                     /strain="C57BL/6J"
                     /tissue_type="thymus"
     CDS             <1..721
                     /codon_start=2
                     /note="CD8 antigen, alpha chain (MGD|MGI:88346
                     GB|AK037467, evidence: BLASTN, 99%, match=2277)"
                     /note="putative"
                     /note="start codon is not identified"
                     /protein_id="BAE23516.1"
                     /transl_table=1
                     /translation="LSLNLLLLGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLV
                     CEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN
                     KYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTG
                     TSQPQRPEDCRPRGSVKGTGLDFACDIYIWAPLAGICVALLLSLIITLICYHRSRKRV
                     CKCPRPLVRQEGKPRPSEKIV"
BASE COUNT          814 a          685 c          675 g          782 t
ORIGIN      
        1 gctgtcgctg aacctgctgc tgctgggtga gtcgattatc ctggggagtg gagaagctaa
       61 gccacaggca cccgaactcc gaatctttcc aaagaaaatg gacgccgaac ttggtcagaa
      121 ggtggacctg gtatgtgaag tgttggggtc cgtttcgcaa ggatgctctt ggctcttcca
      181 gaactccagc tccaaactcc cccagcccac cttcgttgtc tatatggctt catcccacaa
      241 caagataacg tgggacgaga agctgaattc gtcgaaactg ttttctgcca tgagggacac
      301 gaataataag tacgttctca ccctgaacaa gttcagcaag gaaaacgaag gctactattt
      361 ctgctcagtc atcagcaact cggtgatgta cttcagttct gtcgtgccag tccttcagaa
      421 agtgaactct actactacca agccagtgct gcgaactccc tcacctgtgc accctaccgg
      481 gacatctcag ccccagagac cagaagattg tcggccccgt ggctcagtga aggggaccgg
      541 attggacttc gcctgtgata tttacatctg ggcacccttg gccggaatct gcgtggccct
      601 tctgctgtcc ttgatcatca ctctcatctg ctaccacagg agccgaaagc gtgtttgcaa
      661 atgtcccagg ccgctagtca gacaggaagg caagcccaga ccttcagaga aaattgtgta
      721 aaatggcacc gccaggaagc tacaactact acatgacttc agagatctct tcttgcaaga
      781 ggccaggccc tcctttttca agtttcctgc tgtcttatgt attgccctct gtattgtttt
      841 agtaggggtg tgatggggac agttcctttt tctttatgaa ttctctttga cacaaagcat
      901 acttgtatgc atacaatggg agtaatgagc agactgtaac accagagcta gttccagttt
      961 cggggtccat gtcgctggtg gcctcagcac ccacttgata taaatctcct gtctgcccat
     1021 catatagaag aagctgaaga tcagaggtgg aaacagcagg atctgtagac ccggagagaa
     1081 cccaagctag aggaaccctc actgactggt gcagggatct cacccccatc ccctgagctc
     1141 tctgtttagg tatgtgtctt tagtatagca tgcttgtgcc tcaaactgca aggaagcaag
     1201 tggtatgaat ctgtgatctg ctcagctctg gctgtgagca tcagatgtaa caaatcaaag
     1261 tcaggagaac tgcctttagc ggtgcacctg gacatcagag ccccttgtaa gaactgggaa
     1321 attgctggca gtctagtgga gcggtacggt aaatctggaa aacactcccc tctgtcactg
     1381 aaggctgtag tagaatccaa ttaaagctat tcaaaccact gccgcagacc ctctgggtcc
     1441 ctgtgtctgc gtggaatggg tctctcgagc aggtgggcaa agcgtaggat taaactgaca
     1501 aacagatgca cacaggagag gcgttgaatc tgaatgtaat gtcaggtcga acctcggact
     1561 ttttataata cagaaaaaat tccaggggcg atatgtcaca ccagacaagg tacactgaaa
     1621 tttaccagat acaagagaat gacttcgaaa ggaatttgca ggaactagat aaatgtttac
     1681 aatagagatt atcagccctg cctaggatca tcagcctagt gccaggtaag aatttcacac
     1741 tttagtgtta aaagcaccag ggggtaatta ctcttggcag gcctcaagaa taatgtagtg
     1801 tcacggaccc ctaaattcct aggccttgtt aaatcttatc ttgtctggag aatccccatt
     1861 tatcaggaga gtatctcaac ttgctcttgg catggaatgt agcctgtact aaagattttt
     1921 atctcagtga gattcccagg ctctttctgc agaccagatg agctaatggc cttgtttatt
     1981 gtaatgctta attagttact gaataggtta aactccttgc tgttatctgg gatcttggaa
     2041 caatgggggc tttagctatg tcagaattca atcttaaaag gcacttacaa tagggtaatg
     2101 cttaatagag ggcacatgga tccatacact agactaacgc gggagtggaa aattaattta
     2161 tggtttagag ggaacgccag actccaggag ggaatttctg tgaaactctt ttccttgtgg
     2221 gcagcttcca agcttccgct tgtcaaactg acccaactgg agagcgtggc tttcaccaga
     2281 ctccaggagg gagctttcgt gaaactcttc ctcatgagat agcttccaag ctttcgcctg
     2341 tcaagctgac tccaccagag tgcgtggcaa accaccactg tgaaattcct gtagaattat
     2401 gattctctct gctcttggac agcagagggt gaggtttgac agatacgact caggcatcag
     2461 agaagctgca ggcaggccct ctcccatgtc taaacatgag acttggatgt gctcctggga
     2521 tcaccagcat gctttatact ctataaacat agaatccttg gagaacattc cttagcaccc
     2581 ccggaaggca gatgtaaaga ggcagactag acgtggagga agacgctgac tgtcaaaact
     2641 gctgccccag agctaatttc ctctcacagt accatataag taacaaataa taggcaataa
     2701 aaacctgaag gaactaagag tcacccatgg tcctctatct attgttacta tcattttata
     2761 cctgattatt tcctatgcat atatatgtaa gaaagattac accctgggtt ttaaaacaca
     2821 acagtttttg taagcagatt tagtaaataa acatgtatat tatcatttaa tggttaaata
     2881 gcatttcata gtttggttgt atccatttag tattaaattg tttcaaactt ccccctacta
     2941 ttacactact aaactt
//