LOCUS AK137505 1968 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male bone cDNA, RIKEN full-length enriched
library, clone:9830121G22 product:CD244 natural killer cell
receptor 2B4, full insert sequence.
ACCESSION AK137505
VERSION AK137505.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1968)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=9830121G22
FEATURES Location/Qualifiers
source 1..1968
/clone="9830121G22"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:9830121G22"
/db_xref="MGI:3540869"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="bone"
CDS 99..1292
/codon_start=1
/note="CD244 natural killer cell receptor 2B4
(MGD|MGI:109294 GB|AK089530, evidence: BLASTN, 99%,
match=1967)"
/note="putative"
/protein_id="BAE23386.1"
/transl_table=1
/translation="MLGQAVLFTTFLLLRAHQGQDCPDSSEEVVGVSGKPVQLRPSNI
QTKDVSVQWKKTEQGSHRKIEILNWYNDGPSWSNVSFSDIYGFDYGDFALSIKSAKLQ
DSGHYLLEITNTGGKVCNKNFQLLILDHVETPNLKAQWKPWTNGTCQLFLSCLVTKDD
NVSYALYRGSTLISNQRNSTHWENQIDASSLHTYTCNVSNRASWANHTLNFTHGCQSV
PSNFRFLPFGVIIVILVTLFLGAIICFCVWTKKRKQLQFSPKEPLTIYEYVKDSRASR
DQQGCSRASGSPSAVQEDGRGQRELDRRVSEVLEQLPQQTFPGDRGTMYSMIQCKPSD
STSQEKCTVYSVVQPSRKSGSKKRNQNSSLSCTVYEEVGNPWLKAHNPARLSRRELEN
FDVYS"
BASE COUNT 527 a 404 c 478 g 559 t
ORIGIN
1 gagttctgct gtgtcctgct gacagttagc tgcgagccta ttgacatctg agcacctgga
61 gaagacaggg cccccgtagt ctgctctgtc ctgtggtgat gttggggcaa gctgtcctgt
121 tcacaacctt tctgctcctc agggctcatc agggccaaga ctgcccagat tcttctgaag
181 aagtggttgg tgtctcagga aagcctgtcc agctgaggcc ttccaacata cagacaaaag
241 atgtttctgt tcaatggaag aagacagaac agggctcaca cagaaaaatt gagatcctga
301 attggtataa tgatggtccc agttggtcaa atgtatcttt tagtgatatc tatggttttg
361 attatgggga ttttgctctt agtatcaagt cagctaagct gcaagacagt ggtcactacc
421 tgctggagat caccaacaca ggcggaaaag tgtgcaataa gaacttccag cttcttatac
481 ttgatcatgt tgagacccct aacctgaagg cccagtggaa gccctggact aatgggactt
541 gtcaactgtt tttgtcctgc ttggtgacca aggatgacaa tgtgagctac gctttgtaca
601 gagggagcac tctgatctcc aatcaaagga atagtaccca ctgggagaac cagattgacg
661 ccagcagcct gcacacatac acctgcaacg ttagcaacag agccagctgg gcaaaccaca
721 ccctgaactt cacccatggc tgtcaaagtg tcccttcgaa tttcagattt ctgccctttg
781 gggtgatcat cgtgatccta gttacattat ttctcggggc catcatttgt ttctgtgtgt
841 ggactaagaa gaggaagcag ttacagttca gccctaagga acctttgaca atatatgaat
901 atgtcaagga ctcacgagcc agcagggatc aacaaggatg ctctagggcc tctggatctc
961 cctcggctgt ccaggaagat gggaggggac aaagagaatt ggacaggcgt gtttctgagg
1021 tgctggagca gttgccacag cagactttcc ctggagatag aggcaccatg tactctatga
1081 tacagtgcaa gccttctgat tccacatcac aagaaaaatg tacagtatat tcagtagtcc
1141 agccttccag gaagtctgga tccaagaaga ggaaccagaa ctcttcctta agttgtaccg
1201 tgtacgagga ggttggaaac ccatggctca aagctcacaa ccctgccagg ctgagccgca
1261 gagagctgga gaactttgat gtctactcct agttgttagc agtggcctca tcctgtgtca
1321 tgcagcatca ttgactttgg aaggaagcac actgaaggat gcttaagtcc gtatgtgtcc
1381 gtagaccagc ttctaggctg gagagaatgt agtttattaa cattgaagga tgctgagtct
1441 gtatgtgtct gtggaccagc ttttaggctg aagagaatgt agtttattaa cattgaagga
1501 tgctgagtct gtatgtgtct gtggaccagc ttctaggctg aagagaatgt agtttattaa
1561 cattgaagaa tgctgagtct gtatatgtct gtggaccagc ttctaggctg gagatgatgt
1621 agtttattcg tggtttatat tttatatttt attatctttc tttttagaca ggatctgaca
1681 tagcttggca tggcctgaat ttgctgagta gccaagaatg actttaaacc tttggtcctc
1741 ctgcctacac ttcctagggt ttggaatcac agtcatgtaa cactgtgtat agcttggaaa
1801 aaatttctaa cagccactgt atgatcaagg tcattaaaaa atatcaccca agcttataga
1861 tcagatagga atgggtagat aggttgtatt ggccagattt tgagccattg taatctatga
1921 tttatgtttt attttatttt tattatcaat tatataattt aaaatagt
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