LOCUS AK136074 1311 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length
enriched library, clone:7420453E12 product:icos ligand, full
insert sequence.
ACCESSION AK136074
VERSION AK136074.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1311)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=7420453E12
FEATURES Location/Qualifiers
source 1..1311
/clone="7420453E12"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:7420453E12"
/db_xref="MGI:3538933"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="in vitro fertilized eggs"
CDS <1..308
/codon_start=3
/note="icos ligand (MGD|MGI:1354701 GB|NM_015790,
evidence: BLASTN, 99%, match=1296)"
/note="putative"
/note="start codon is not identified"
/protein_id="BAE22807.1"
/transl_table=1
/translation="GLYDVISTLRLPWTSRGDVLCCVENVALHQNITSISRAESFTGN
NTKNPQETHNNELKVLVPVLAVLAAAAFVSFIIYRRTRPHRSYTGPKTVQLELTDHA"
BASE COUNT 316 a 331 c 343 g 321 t
ORIGIN
1 tgggcctgta tgatgtaatc agcacattaa ggctcccttg gacatctcgt ggggatgttc
61 tgtgctgcgt agagaatgtg gctctccacc agaacatcac tagcattagc cgggcagaaa
121 gtttcactgg aaataacaca aagaacccac aggaaaccca caataatgag ttaaaagtcc
181 ttgtccccgt ccttgctgta ctggcggcag cggcattcgt ttccttcatc atatacagac
241 gcacgcgtcc ccaccgaagc tatacaggac ccaagactgt acagcttgaa cttacagacc
301 acgcctgaca ggactctgcc caggatatgg acagggtttc tgtgagttgc caccaggtgg
361 atgtcagaca caacttcaga gtggaccccc acaggcctgg tgacagagga caacgagctg
421 ctctgcttat gggctgtgat ggaggccagg aatccctggc tttacgaggc acagagactt
481 catcccagaa accccgaggg agatctctcc agtgggcagc agcaacatca tcggaatatg
541 gagcctccgg tgagctgtcg gcacagagag cagcagcttg tgagaagatc cttccttggc
601 acgttactac tcaggcctag gagctttata aaagagcgtt tgagccactc tgaaagccct
661 acagagtcta ctggagactt tccctgcagg accttcagtt ggggaggaag cctgacttta
721 tttaggtctc aggctacttg ggcctcttcg aggatatgtg ggattttgtc tactgcaaac
781 ctgtttctgg ctgacaatgg ttgggctcag aggcactcag cttcacaaca tcaatgggac
841 acgcctcatc cttgacttcc tgtggctaca gaagctttcc gaaagccttg agctctttca
901 gactgaacag ctctgcccag tctcagcagc ccatgaagat ctcaactcca gcttcctggg
961 tctccgtgtt gctggccaga atagagctag ctcttttgtt tcaagatggt tctgcaaagt
1021 tggctgcttg gaaacctagg gatgtatgta caagctccag gctgatgcag tagggggcac
1081 ggactccccg atggaacaca gtatctgacc ctaggtgagg gcaagctcct tcccacgcag
1141 aggactggaa attctggacc gtcaaggcct gtctgctatg tggctggggc tcagtgctga
1201 tggatgtgtg agatctcagg aatgaggagt gagaaccctg ggctcaggac taggaagacc
1261 tgtccatttt tttttttttt ttaatgccca catggaaatt ttttatttaa t
//