LOCUS       AK121703                3878 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J033074F07, full insert
            sequence.
ACCESSION   AK121703
VERSION     AK121703.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3878)
  AUTHORS   Kikuchi,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
            Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
            Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
            Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
            Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
            Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
            Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
            Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
            Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Collection, mapping, and annotation of 28K full-length cDNA clones
            from japonica rice
  JOURNAL   Unpublished (2003)
REFERENCE   3
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 32K full-length cDNA clones from
            japonica rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
            Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
            Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., 
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., 
            Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., 
            Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., 
            Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., 
            Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., 
            Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., 
            Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences 
            Center and Genome Science Laboratory in Riken: Adachi,J., 
            Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., 
            Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., 
            Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., 
            Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., 
            Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., 
            Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., 
            Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., 
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., 
            Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., 
            Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., 
            Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., 
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., 
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., 
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..3878
                     /clone="J033074F07"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     misc_feature    1..3878
                     /db_xref="Osa1:LOC_Os12g41950"
                     /db_xref="RAP-DB:Os12g0613700"
                     /note="(RAP Annotation release2) Transcriptional factor
                     B3 family protein"
                     /note="(Rice Genome Annotation Project) auxin response
                     factor 6, putative, expressed"
                     /note="mapping to R12-TIGRv4S1-000807R (Chr.12: short
                     arm=25968764, long arm=25974736, direction=reverse) for
                     TIGR Pseudomol ver4"
BASE COUNT          946 a          938 c          989 g         1005 t
ORIGIN      
        1 ggaagaaaaa aaaaactcga ccaccacctc caccactcac acctcgatcc ggccatggcg
       61 gcctagccct agcacctagg gttcgcgccc ccaccaccct ccccgccgtc tcggaggccg
      121 cgcgccccca gctcccgcct cgctgtcgcg ccgcctgatt ccgccgccgg cgccgaatgc
      181 tacgccgttt ggtggtggtg gtggtcgtcg tcgcctgatt ccgcgatctc gtgagctccg
      241 gggggtgcgc ggttgcggcg gcggcgcctg agaggaaggc tggactcgtc cgcggcggcg
      301 gcggctgcgg gctagtgtcg gtggcgattt gagggcggcg gtttgggtta gccgtcgccg
      361 agagtgaagg tgctgtgttt tgagtgcttg ggatgagctg cgtgttgatc tgatgaactc
      421 ggggtcggcg gcgttcttcg gtttctccgc tcacttgctc ccgccgttgg cgaaaatccg
      481 gttcttcgga tcgagttgcg gtcgcctggg tgtttttcat cagttttggg tgaaaatact
      541 cgagctctga ggggggtgat tggtttccaa gtttgattga tttaaagagt ttgtgtggaa
      601 ttttttcggg gagatgaagg ggaggatttg ctgcgacggt ccaggttttg gttagttgtt
      661 gagggagaaa aaaatggaag atatttctgg gcgcaagaga ggaaggcagg tgtttgctgc
      721 tgctgctggg agcatgatgg gaagctgacc agcagcttct ccagtatcct ggtgcggcgg
      781 agtttcgtgc tctttggcga cgggtgcact ggtgattgga gatgaagctc tctccgccgg
      841 cgtcggcgga tatgccgcag gccttgccgg agaacgacgg ggaacaaaga tgtctgaact
      901 cggagctgtg gcatgcatgc gctgggcccc ttgtgtcttt gccagtggtc aggagcaggg
      961 tcgtctactt tccacagggc catagcgagc aggttgcggc atcaactaat aaggaagttg
     1021 atgctcaaat cccaaattat ccaaacttac ctcctcagtt aatctgccag cttcataatg
     1081 tcaccatgca tgctgatgca gagacagatg aagtctatgc tcagatgaca ttgcaaccat
     1141 tgagcccgga agagcaaaag gagcctttcc ttccaatgga gttgggtgct gctagcaagc
     1201 aacccactaa ttacttctgc aagacattga ctgcaagtga cacgagcact catggtggtt
     1261 tctctgttcc ccgccgggca gctgagaaag tcttccctcc actagatttt tcacagcagc
     1321 cttcggcaca ggagctgatt gcaagagatt tgcatgataa tgaatggaaa tttcgccata
     1381 tatttcgtgg tcagcctaaa aggcatctcc tgacaacagg ctggagtgtg tttgtgagtg
     1441 cgaaaagact agtagcagga gactctgtta tatttatctg gaatgataac aatcaacttc
     1501 ttttgggaat acgtcgtgca aatcgccaac agactgttat gccctcttcc gtgttgtcaa
     1561 gcgatagcat gcatataggt cttcttgcag cagcagctca tgctgcagcc acaaatagtc
     1621 gcttcactat tttctataac cccagggcta gcccttctga atttgtgatt ccattggcca
     1681 agtatgtgaa agctgtttac cacacacgtg tatctgttgg aatgcgtttt agaatgcttt
     1741 tcgagacaga ggagtcaagt gtcaggcgat acatgggtac aatcaccagc ataagtgatc
     1801 tagattcagt gcgctggcca aactcacact ggcgttctgt taaggttggt tgggatgagt
     1861 ccaccactgg tgataaacag ccaagggttt ctctttggga gattgagcct ttgacaacct
     1921 ttccgatgta ccccagtgct tttcctttaa gacttaagcg tccgtgggct tcaggactgc
     1981 ctatgcatgg catgttcaat ggtgggggaa atgacgattt tgcacgctat tcttctctca
     2041 tgtggcttcg agacggaaat agaggaaccc agtccctgaa ttttcaagga catggagtct
     2101 caccatggct tcagccaaga atagattctc cattgctggg ccttaagcca gacacgtacc
     2161 agcaaatggc tgcagcagca ctggaagaaa ttcgatatgg ggacccttca aagcagcatc
     2221 cagctactct gcaataccaa cagactcata atctgaacag tggattaaat tctctgtttg
     2281 caagccatgt tctagggcag gtgcagtttc aacctcagca gtcacccctg caagttgttc
     2341 agcaaggcca ttgtcagaac actggtgact ctgggttcct tcaaggtcag cttccacggc
     2401 tgcagttgca taacactcag cagctgctaa aggagcaaga gttgcagcag cagcaaagac
     2461 agcatgtttt acaagagcaa tctagtcaag agatgcaaca gcagctccca tctagtgatc
     2521 atcatgttgc tgatgtagct tctgagtctg gatctgctcc tcaggcacaa tcatcattgc
     2581 ttagtggatc atcattctac aatcagaacc tcttagaagg aaatagtgat ccccctttac
     2641 atctacacaa caatttccac aacttctcta accaggaagc ctcaaacctt cttattttgc
     2701 ctcgaagtag ccaattaatg gcatcagatg ggtggccttc aaagcgatta actttagaat
     2761 ctgctgttca tcctgaagct ccgtccatgc accccaagat tgagaaagta aatcaccagg
     2821 gtatatctca ttttcctggc gcctttccac cacaatcagc aagaggctgt tccatcgtcc
     2881 aggattgcag ggcagatgct gagaaccgcc tactttcatc atcatttgaa ctccaggatg
     2941 gcatgacaag catcataact gatgctaaca gagaaactga tactatggcc atacctttgt
     3001 tgagatatag tggtgcagat ttgacaactg aaaacacctt agcaacctcc aattgtttag
     3061 gtgaatctgg aacgttcaat cctcttaata acatatctgt aaatccatca caaggagcaa
     3121 cctttgtgaa ggtttacaaa ttagggtccc ttgggagatc acttgacatc tccagattca
     3181 gcagctactg cgagttacgt agtgagcttg agcgtctctt tggtcttgaa ggccaactgg
     3241 aggaccctgt aagatcaggc tggcagcttg tatttgtcga ccgggaaaat gacattcttc
     3301 tcgtcggcga cgatccatgg caggagtttg caaatagcgt atggtgcatc aaaatactct
     3361 cgccacagga ggtgcagcag ttggttcgtg gtggagacgg ccttctgtcc tcacctggag
     3421 caaggatgca gcagagcaat gcctgcgacg actattctgc aagccacaac atgcagaata
     3481 tcgccggaaa cattgcatct gtagcgcctc tggactactg agatgtagac cagaatccaa
     3541 actaagcacc cttaagactg cagggtcacc attcgtgatc gcctgcattc catgcgatct
     3601 tcactagtcc tgtccgaatc agtagcaact cagtcaataa tatagctaga tgatccgttg
     3661 tattccatct gatcatggac atgctgtatg atagctgctt tagctctatt aaatctctaa
     3721 tggcaggcaa ctaggcaaga acagttctat gatgaatgat ggcagtcgct gtagaattga
     3781 ccttattctg tagctataat atgatgtcta gaactgatga ttccaatttc caaatggagc
     3841 ccggaacata ttaaaatcaa tcatttgtcg ccttcttc
//