LOCUS AK121703 3878 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J033074F07, full insert sequence. ACCESSION AK121703 VERSION AK121703.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 3878) AUTHORS Kikuchi,S. TITLE Direct Submission JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Collection, mapping, and annotation of 28K full-length cDNA clones from japonica rice JOURNAL Unpublished (2003) REFERENCE 3 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 32K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..3878 /clone="J033074F07" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..3878 /db_xref="Osa1:LOC_Os12g41950" /db_xref="RAP-DB:Os12g0613700" /note="(RAP Annotation release2) Transcriptional factor B3 family protein" /note="(Rice Genome Annotation Project) auxin response factor 6, putative, expressed" /note="mapping to R12-TIGRv4S1-000807R (Chr.12: short arm=25968764, long arm=25974736, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 946 a 938 c 989 g 1005 t ORIGIN 1 ggaagaaaaa aaaaactcga ccaccacctc caccactcac acctcgatcc ggccatggcg 61 gcctagccct agcacctagg gttcgcgccc ccaccaccct ccccgccgtc tcggaggccg 121 cgcgccccca gctcccgcct cgctgtcgcg ccgcctgatt ccgccgccgg cgccgaatgc 181 tacgccgttt ggtggtggtg gtggtcgtcg tcgcctgatt ccgcgatctc gtgagctccg 241 gggggtgcgc ggttgcggcg gcggcgcctg agaggaaggc tggactcgtc cgcggcggcg 301 gcggctgcgg gctagtgtcg gtggcgattt gagggcggcg gtttgggtta gccgtcgccg 361 agagtgaagg tgctgtgttt tgagtgcttg ggatgagctg cgtgttgatc tgatgaactc 421 ggggtcggcg gcgttcttcg gtttctccgc tcacttgctc ccgccgttgg cgaaaatccg 481 gttcttcgga tcgagttgcg gtcgcctggg tgtttttcat cagttttggg tgaaaatact 541 cgagctctga ggggggtgat tggtttccaa gtttgattga tttaaagagt ttgtgtggaa 601 ttttttcggg gagatgaagg ggaggatttg ctgcgacggt ccaggttttg gttagttgtt 661 gagggagaaa aaaatggaag atatttctgg gcgcaagaga ggaaggcagg tgtttgctgc 721 tgctgctggg agcatgatgg gaagctgacc agcagcttct ccagtatcct ggtgcggcgg 781 agtttcgtgc tctttggcga cgggtgcact ggtgattgga gatgaagctc tctccgccgg 841 cgtcggcgga tatgccgcag gccttgccgg agaacgacgg ggaacaaaga tgtctgaact 901 cggagctgtg gcatgcatgc gctgggcccc ttgtgtcttt gccagtggtc aggagcaggg 961 tcgtctactt tccacagggc catagcgagc aggttgcggc atcaactaat aaggaagttg 1021 atgctcaaat cccaaattat ccaaacttac ctcctcagtt aatctgccag cttcataatg 1081 tcaccatgca tgctgatgca gagacagatg aagtctatgc tcagatgaca ttgcaaccat 1141 tgagcccgga agagcaaaag gagcctttcc ttccaatgga gttgggtgct gctagcaagc 1201 aacccactaa ttacttctgc aagacattga ctgcaagtga cacgagcact catggtggtt 1261 tctctgttcc ccgccgggca gctgagaaag tcttccctcc actagatttt tcacagcagc 1321 cttcggcaca ggagctgatt gcaagagatt tgcatgataa tgaatggaaa tttcgccata 1381 tatttcgtgg tcagcctaaa aggcatctcc tgacaacagg ctggagtgtg tttgtgagtg 1441 cgaaaagact agtagcagga gactctgtta tatttatctg gaatgataac aatcaacttc 1501 ttttgggaat acgtcgtgca aatcgccaac agactgttat gccctcttcc gtgttgtcaa 1561 gcgatagcat gcatataggt cttcttgcag cagcagctca tgctgcagcc acaaatagtc 1621 gcttcactat tttctataac cccagggcta gcccttctga atttgtgatt ccattggcca 1681 agtatgtgaa agctgtttac cacacacgtg tatctgttgg aatgcgtttt agaatgcttt 1741 tcgagacaga ggagtcaagt gtcaggcgat acatgggtac aatcaccagc ataagtgatc 1801 tagattcagt gcgctggcca aactcacact ggcgttctgt taaggttggt tgggatgagt 1861 ccaccactgg tgataaacag ccaagggttt ctctttggga gattgagcct ttgacaacct 1921 ttccgatgta ccccagtgct tttcctttaa gacttaagcg tccgtgggct tcaggactgc 1981 ctatgcatgg catgttcaat ggtgggggaa atgacgattt tgcacgctat tcttctctca 2041 tgtggcttcg agacggaaat agaggaaccc agtccctgaa ttttcaagga catggagtct 2101 caccatggct tcagccaaga atagattctc cattgctggg ccttaagcca gacacgtacc 2161 agcaaatggc tgcagcagca ctggaagaaa ttcgatatgg ggacccttca aagcagcatc 2221 cagctactct gcaataccaa cagactcata atctgaacag tggattaaat tctctgtttg 2281 caagccatgt tctagggcag gtgcagtttc aacctcagca gtcacccctg caagttgttc 2341 agcaaggcca ttgtcagaac actggtgact ctgggttcct tcaaggtcag cttccacggc 2401 tgcagttgca taacactcag cagctgctaa aggagcaaga gttgcagcag cagcaaagac 2461 agcatgtttt acaagagcaa tctagtcaag agatgcaaca gcagctccca tctagtgatc 2521 atcatgttgc tgatgtagct tctgagtctg gatctgctcc tcaggcacaa tcatcattgc 2581 ttagtggatc atcattctac aatcagaacc tcttagaagg aaatagtgat ccccctttac 2641 atctacacaa caatttccac aacttctcta accaggaagc ctcaaacctt cttattttgc 2701 ctcgaagtag ccaattaatg gcatcagatg ggtggccttc aaagcgatta actttagaat 2761 ctgctgttca tcctgaagct ccgtccatgc accccaagat tgagaaagta aatcaccagg 2821 gtatatctca ttttcctggc gcctttccac cacaatcagc aagaggctgt tccatcgtcc 2881 aggattgcag ggcagatgct gagaaccgcc tactttcatc atcatttgaa ctccaggatg 2941 gcatgacaag catcataact gatgctaaca gagaaactga tactatggcc atacctttgt 3001 tgagatatag tggtgcagat ttgacaactg aaaacacctt agcaacctcc aattgtttag 3061 gtgaatctgg aacgttcaat cctcttaata acatatctgt aaatccatca caaggagcaa 3121 cctttgtgaa ggtttacaaa ttagggtccc ttgggagatc acttgacatc tccagattca 3181 gcagctactg cgagttacgt agtgagcttg agcgtctctt tggtcttgaa ggccaactgg 3241 aggaccctgt aagatcaggc tggcagcttg tatttgtcga ccgggaaaat gacattcttc 3301 tcgtcggcga cgatccatgg caggagtttg caaatagcgt atggtgcatc aaaatactct 3361 cgccacagga ggtgcagcag ttggttcgtg gtggagacgg ccttctgtcc tcacctggag 3421 caaggatgca gcagagcaat gcctgcgacg actattctgc aagccacaac atgcagaata 3481 tcgccggaaa cattgcatct gtagcgcctc tggactactg agatgtagac cagaatccaa 3541 actaagcacc cttaagactg cagggtcacc attcgtgatc gcctgcattc catgcgatct 3601 tcactagtcc tgtccgaatc agtagcaact cagtcaataa tatagctaga tgatccgttg 3661 tattccatct gatcatggac atgctgtatg atagctgctt tagctctatt aaatctctaa 3721 tggcaggcaa ctaggcaaga acagttctat gatgaatgat ggcagtcgct gtagaattga 3781 ccttattctg tagctataat atgatgtcta gaactgatga ttccaatttc caaatggagc 3841 ccggaacata ttaaaatcaa tcatttgtcg ccttcttc //