LOCUS AK121362 1964 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023124E16, full insert
sequence.
ACCESSION AK121362
VERSION AK121362.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1964)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1964
/clone="J023124E16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 393..1460
/db_xref="Osa1:LOC_Os01g01050"
/db_xref="RAP-DB:Os01g0100600"
/note="(RAP Annotation release2) Single-stranded nucleic
acid binding R3H domain containing protein"
/note="(Rice Genome Annotation Project) R3H domain
containing protein, expressed"
/note="mapping to R01-TIGRv4S1-000005F (Chr.1: short
arm=19642, long arm=23696, direction=forward) for TIGR
Pseudomol ver4"
/protein_id="BAH00447.1"
/translation="MINFAVQSRCAPTNSLCSCVALCERNFKLEQVEELASLIKDNLY
SKHLVLSTEETLVGILQNQYHNSDDDEDEDDIVAAYRGTNRNILELQPASSYQRLLLH
RLADIYGFVHESVGEGEDRHLVLQRCPETAIPPVLVSDVLWEYDNKDTSTSVVVKRKD
TDLEEAWKEDAQENISAEISHLKNDADLKALQKSVAPPAPSLKEREAAYRAARERIFS
AHDAKGNGTAVAKPRHVPAVAQRMIAHALGKKVESPTETAAVKNGKGKEPAESSRNKL
NPRTAGGKEDSRYVENGRMRLHTGNPCKQSWRTSNSRAASSVSPDELKREQVGAAKRM
FVHALRLPGVEGSDGPVRKGK"
BASE COUNT 525 a 432 c 570 g 437 t
ORIGIN
1 gacaagtcac agggaggagt cgaaaagagt caataccagc cgcgccaccg ctccctcgct
61 gacctgcccg tgttcgcccc tctcgccggc cgccgacccg cccctgctgc tcaccgctcc
121 agcctccgct catcccaagc cttccaccac aaccccccac ccctgctcgc ccgcgcaccc
181 agctcaccag cgcacccgtc tggggtctgc ctgccgcttc tccctcccgt gcaggtgcag
241 gggaagaggc aaggagggca agaccggggc gcagtgggga gtacggagga agctggtgca
301 gcgtgggaga gagggagctg gaaaagaagg aagaaagggg ggcagtacaa gggggacttg
361 ggaggaggaa gaagggggaa tattttgagt atatgatcaa tttcgccgtc caatccagat
421 gtgcgccaac caattcgcta tgttcttgtg ttgctctgtg cgaacgaaac tttaaactgg
481 aacaggttga ggagctggct tcactcatca aggacaacct ctacagcaag cacctcgtcc
541 tctctactga ggaaaccctc gtcgggatcc tacagaacca gtaccacaac tctgacgatg
601 acgaggatga ggacgatata gtggcagcat accgcgggac aaataggaat atcctagagc
661 tccaacctgc cagctcctat caacgtcttc ttttgcatcg ccttgccgac atctacgggt
721 ttgttcatga atctgttggt gaaggtgaag atcgacactt agttctccag cgctgccctg
781 aaactgccat cccacctgtc ctcgtaagcg acgtattatg ggagtatgac aacaaagata
841 catcgacatc tgttgtagtg aagaggaaag atacagatct tgaagaagcc tggaaggaag
901 atgcccaaga aaatatttct gctgaaatct cgcatttgaa aaatgatgca gatttgaagg
961 ctttgcaaaa gtcagttgca cccccagcac cgtcactcaa ggagagggaa gctgcttatc
1021 gagctgctcg cgagcgtatc ttctcagcgc atgatgccaa gggaaatggg acagcagtgg
1081 caaaacctag gcatgttcct gctgttgctc aacggatgat cgcgcatgca cttggcaaaa
1141 aagttgagag cccgacagag acagcagccg tgaagaatgg caaaggaaag gagccagcgg
1201 aaagtagtag gaacaagtta aacccacgca cagcaggtgg caaggaagat agcaggtatg
1261 ttgagaatgg cagaatgagg ttgcacaccg ggaatccatg taagcagagc tggcgtacaa
1321 gtaacagtag agctgctagt agtgttagtc ctgatgaact gaagagggag caggttggag
1381 cggcaaagag gatgtttgtg catgccctgc ggctgcctgg tgttgaagga agtgatggtc
1441 cggtgcggaa aggcaagtaa gagtcgagtt gagatgggag gtgtaatgta ggtattagga
1501 tggagtgaaa tggcaactct gtgatgattt tcatctggtg atactatgct ggtataagat
1561 gagatggaag gcctggtatc ccttggtgga agaagttgaa gcgcaaaatg caatgctggg
1621 gatatgcaag tggaagaagt tgaagcgcaa aatgcaatgc tgggggatat gcaagtggaa
1681 gtggtgagag ctagctgctt gccgatggca gcagttgtgg caatattgag tgcaattgac
1741 aggtctttgt ttgttttgtt tttttttttt gccagaagct gcagtttagc aggtccttat
1801 tttcgtcaga agttacaaag agagaatatg ccaattttta gctttatatt ttgctgaagg
1861 cagacaagtt gtagaggaat atgctgatcc ttagaaagaa ctttgtgtag cctatttgga
1921 tggtttcaga ctttcagtga tagagtcgga gcaatgttgg tccc
//