LOCUS AK120952 4830 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023038N03, full insert sequence. ACCESSION AK120952 VERSION AK120952.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 4830) AUTHORS Kikuchi,S. TITLE Direct Submission JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Collection, mapping, and annotation of 28K full-length cDNA clones from japonica rice JOURNAL Unpublished (2003) REFERENCE 3 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 32K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..4830 /clone="J023038N03" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..4830 /db_xref="Osa1:LOC_Os07g06620" /note="(Rice Genome Annotation Project) protein YABBY, putative, expressed" /note="mapping to R07-TIGRv4S1-000146F (Chr.7: short arm=3218222, long arm=3223054, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 1406 a 930 c 900 g 1594 t ORIGIN 1 gtatatacta cttccgtccc aaaataagtg cagtcgtgga tatctgtgtc taatgtttga 61 ctgtctgtct tatttaaaaa aattatgaaa aaattaataa aattagtcac aaaaagtatt 121 attcatgttt tatcatctaa taacaataaa aatactaatc ataaattttt ttaataagac 181 gaatggtcaa acgttggaca tgaaagtgca aaactgctga tcgcacccaa agctgctagc 241 tagtagtacc tccacttacc agaaaccggg ttagccctga cggctaaaaa ccgtcaagaa 301 taaacgaatg gaaggggatg cttgatcctg tagccccatc tcaagtgacg tgcaatatac 361 tgtacataaa tgtgtacatg aacttgaatt gttgtattat agtctatata ccactatata 421 cattgataag acaagaacaa agggttttgg aactttgttc ttcatcgagg gaattaatag 481 cattaataca aaaatcgtac attgttttgt ttgacagatt aacagtataa tgcaatgtta 541 tatttaattc atgtttttct tgactccgta aagatagtca ataaagttgt gcatgcatgg 601 ctttcttgtc aataaatgtg gttcttgcac attgtgcata ccagtcacac attttccatt 661 ttgttgatgt tgttaggccc aatgttattt ggtatgaaaa tgatgccata ctgccacaca 721 caaacgaatg cgagatgaca accaacgtta aacaaaaaaa aacagaacct atctgctgat 781 caaagacaaa ccctgcaagc cagtaacggt aatgcatgca gtagtactgc actaaacagc 841 agaagtccta aataattaat tcaccatgga atattaagcc ccctggcaac gtagactctt 901 ctcctaccac tcattctccc aaataagcta cccactccgt ccaacgatat aagcatttct 961 agattgttaa gtactccctc cattccaaat tgatatacat atagtttttt tgaggttatt 1021 cctaaatgat ctacatattt gtgttcattc attaggtcta ttcgttattt gtgcattgga 1081 gtaaatggac attgatgcat gcatccatgc acacaagtat ttataaccca catgcaatat 1141 catgatttgt tattggctag gagatagtgg ggatggtgca tgcatctagc ttgttgctag 1201 agtaaatata gtatgagaga gttattagct tttcttggtc ttggtgtaca tatgaaatat 1261 gtagatcaat ttggaatgga gggagtaaat gtgaaggtta aggagaaaag actttagtct 1321 ctctcgttta atgagagatt gatggttggg gatggaaggg tgattgagag taagaattgg 1381 aggtgattgg tgtaacaagt acacaagtgt atgaatgcta ttattaattc ttggataaaa 1441 ttcaaatgct tatattgttg gacggacgga gtactagcta tatagctagt cacaccagca 1501 tttgctaatt ggctgctcat ctgctgtacc cacatttcat ttggccttga tctttccaac 1561 ctctccttgc actcagcttg cagcttagct agctgcacac actgtcctcc cacaagacac 1621 cccaccaaac accttttctt cctccctttc ttgtgtgtgc ccccactcag atcagccagc 1681 agctggtagt accctctcta gcttattgca gggccatatc ctctgctagc ttagcttctc 1741 tcacaaaccc cttaattcca tctcatagac agccaaaagg gtcaagagga aattgggttt 1801 gtgctctccc caaaatcctc catatatagt gcacaggagg catcattctg ttcatacata 1861 tctctccctt gcttgctttg ctcctggata tatagctagc ttctttcttt cttcctctct 1921 ccctgtgtgg cacgcgcctc caatcgatct cttcggtgag tagacgcatc gagatcgggg 1981 ggaaatgtcg gtccagttta catcggagca tgtttgctat gtcaactgca actattgcaa 2041 cactatcctt gtggtatcgt cttcctccct catctctttc tctctctagc tctctctctc 2101 tctctcatat cttgtgtatt tctgttctaa tttgaggtgt ttgccggatc tatatgggga 2161 gttcaatttt tttgtatatt tttttgaagg ggctaatgcg tgcatgctgt agtccatgca 2221 tagaggtagc ctaagctagg ggaaaataag caccctaatc aagtatgcta gctacttgtt 2281 tactaaacta attgcacttt gttttgtcct ggataagttt gtaattttat atttctggag 2341 agttctccag tacatcgaaa tccagcaatc cggtcttttt gcataaactt ccatgtacat 2401 ggtaacagaa atgcacagat tttctttatg gcaaacataa aatcatataa atagaaggat 2461 attgcaaaca tactttgtac tatttctttt catcttctcc aacttttcaa gaaaaaaaaa 2521 tccatatctt ccacccaagg gtgtcatttt tgtatctcct tgaaacaaga ctgtttctct 2581 ctgacttgat ccaccttgta cggttttaat ttatttttac agaagggata aactcttctt 2641 ggttttggat gagaaccaac atatttgtat atatcctata gcggtgcatt atccagatcc 2701 aacactattt gattatattc tttcgctcat caggcaaaat atcttgtaca aaatggtaat 2761 tttccttgga aagaatgctt gatttgctca tagagaaaaa aaaaagtatt gtccccgaca 2821 tacatagttt ttcgacgcat ggggtcatac acatttttgg aaggaacatg tacataagat 2881 aatattatct gagagctttc tcatgtatgg atctactata ctaccacaaa aagaaagaaa 2941 taatttcagg tcaaattaaa cttttagatg cgtgcaggtg attaaagcta gcatctttaa 3001 ccattaatta ttgcctctct agctttagct agctgctcca tgcgataata ccccagtgtc 3061 tgtactgtgc tgcacacttg gagctattcc tctgattatt ggctgtgccc tgagtgtgcc 3121 cacctctcca aaaccgaaat tttttatgaa taaacaaatt ttaattaaca aaaaaggctt 3181 taagctgctg cctgttgcta ccacatcctg cagctttgtc tctcattctg cacatgtgca 3241 gaaagaagtg gatctgcctg tcatgtcatt ttcctctttg ttgatgtttg cgcaggtggg 3301 tctcttctac atactctctc tagctagcta gtagtagtag ctatattgtg tgtgtgtgag 3361 tatgcaatat atatgcatgc gtctcttagt atgtgttgtg ctgaaagaga ggagagtgtg 3421 acatgaactt ttaactgtaa aagaagtgtg acatgaactt ttaactgtaa agatgcctcc 3481 tcttttttca tgcttttttt ttggaaagga tgattgtact gttcacacga ccaaatctaa 3541 cttacctaag tatagatctc agtcatctgc acatagattt ctctatctca atctcaagat 3601 ctgtctctct gctgtgtctc tctcttcctg tttgtttgtg tgtgtgtgtc tgactgatga 3661 gatgaatcta gggagatatt cttctttaga cctgattgag atgtcatgtc tctgcctcct 3721 ggaggccttg agtgtgtgag atgcatcatg cattgcatgg tagtaagaga aaacatgcat 3781 atatggctca agcttctcca ggcaaagagc tagctaagct ctcaaaaggg agacacactt 3841 gggaaaaggt gttatttgtg catgatggcc aaataggact caaaagacga tatggatatg 3901 agacatggtg caacttttga cattcctagc tactagctag ctactttgtc atcacacata 3961 tatattgact acatacacat atatattgac tacatacaca catacacata tatattgtga 4021 aacggtacgt agcctagtgg ttgcagtgac ctgagtaaca ccccaaggtt ctgagttcaa 4081 atatccatag aagtgaattt tagattgggt tatattatgg atggctaagt tctctgtgtg 4141 ataggctaag ttcctaattt aaaacgggtt atttgtgctt gataggctaa gtttttatcc 4201 aattggatat agaggccggg taaaaaaata cacttctcta aaaacacaca cacatgcatt 4261 ggcatttgac aattaatata tatggatata tacttcaatt aatcttgtag ctgcaaggct 4321 actatttttt ttccagcagc atggtcatct actcacctct tatttgcagt gcatgactga 4381 acactgttgc agagaacaca ttgaattatt tgaagagaga ccagacggta gcatacgttg 4441 atacatgttc aggccaatgc tgatacatat agctagcaag ctagctagca tagcatttta 4501 gcattatttg cttggattct tgtggatcga tctgcgataa ataattttat gaacagttat 4561 atcttatacc actatttaag aatccaatga atttggacga agggactagg gagtcaatta 4621 attaggacca ggaggtaaac aataatactg tgtgcttgtg tggtaactct accagactca 4681 ttaattggag ctacatattc catgtatata tatatgtcat gaaatcctat ttttttctgt 4741 tttacgtttc tgatagaatt acccctatat atttttatta ataagtttgt tatgcatata 4801 ataaatcaca gtgttctgag agaggaaacg //