LOCUS AK120773 2626 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023008J18, full insert
sequence.
ACCESSION AK120773
VERSION AK120773.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2626)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2626
/clone="J023008J18"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 84..2054
/db_xref="Osa1:LOC_Os08g44820"
/db_xref="RAP-DB:Os08g0562200"
/note="(RAP Annotation release2) Similar to CUC2"
/note="(Rice Genome Annotation Project) no apical
meristem protein, expressed"
/note="mapping to R08-TIGRv4S1-000930R (Chr.8: short
arm=28012032, long arm=28016384, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAH00166.1"
/translation="MSHPSSSSSSAPPAAAEATSLAPGFRFHPTDEELVSYYLKRKVH
GRPLKVDAIAEVDLYKVEPWDLPARSRLRSRDSQWYFFSRLDRKHANRARTNRATAGG
YWKTTGKDREVRNGPTTVGMKKTLVFHAGRAPKGERTNWVMHEYRLDGQTTIPPQDSF
VVCRIFQKAGPGPQNGAQYGAPFVEEEWEEDDEDVGLLPVEEKDNSDDQEKEISGAME
KGYLQMSDLVQNLVDQNENGTIALPVSDNSNNSNHSEDVDGNSGDILSDQNLGSNFLH
HVEPVEQNGLVLNENMFSSANAGDLFNISSPNDGFLELKDFADIADLENPLANESTIW
PSDGWPWKSTDSMEAVNGASNEFSPLAGEQIFQPEELEQLLQSLQEDSHMGSTISDPP
HSSITNLAKPEEDCLMFYDAPFDSSMCDDGFRQLNGFLGSPSTNLSGIDMVDDGMPYY
DAMDDNLFNDLLSSVQPSAGSSSHAFSGPVLTQEVNNSTYTYSPTQKVLEPNFVVGAP
SSARLPEAGSQLNYVVLPDSQTKSSLIGKRFVKILDSISAPPAFAAAEFPASLRKSLA
PISGAHHNTIRVSAEVISIGSLTPDSQDKWSLEKDEGMELLFSAGFEPDTRVHFGCNT
ITAVLRGGFCLFFFSAIMLLVSYEVGMCIYGK"
BASE COUNT 636 a 643 c 649 g 698 t
ORIGIN
1 ggctgcgttt cgtttcttcc ccaaaaacca agggggaagg caaactttcc ccaaatctca
61 accccaatcc caatctaggg cacatgagcc acccctcgtc gtcgtcctcc tccgctcccc
121 cggcggcggc cgaggccacc tccctcgcac cgggattccg gttccacccg acggatgagg
181 agctggtgtc ctactacctg aagcggaagg tccatgggcg gccgctcaag gtggacgcca
241 tcgcggaggt ggacctgtac aaggtggagc catgggacct ccccgcccgc tcccgcctcc
301 gcagccgcga ctcccagtgg tacttcttca gccgcctcga ccgcaagcac gccaaccgcg
361 cccgcaccaa ccgcgccacc gccggcggct actggaagac caccggcaag gacagggagg
421 tccgcaacgg ccccaccacc gtcggcatga agaagaccct cgtcttccac gccggccgcg
481 cccccaaggg cgagcgcacc aactgggtca tgcacgagta ccgcctcgac ggccaaacca
541 ccatcccacc acaggattca ttcgtcgtgt gccgtatctt ccagaaagcc ggcccaggtc
601 cacagaacgg ggctcagtac ggagctcctt ttgttgagga ggagtgggag gaggatgacg
661 aggatgttgg tttgctaccg gtggaggaga aggacaactc tgatgaccag gaaaaggaaa
721 tttctggtgc tatggagaag ggctatctcc agatgagtga cctcgttcag aacttggttg
781 atcaaaatga gaatggtacc attgccttgc cagtttctga caattcaaac aacagcaacc
841 attctgaaga cgtggatgga aattcagggg acattttaag tgaccaaaac cttgggtcta
901 actttcttca ccatgttgag cctgtggagc aaaatggcct agtgcttaat gaaaatatgt
961 tttctagtgc caatgctgga gaccttttta atatatctag ccccaatgat ggattcctag
1021 aactgaagga ttttgcagat attgcagatt tggagaatcc tttagccaat gaatccacca
1081 tctggccttc tgatggttgg ccctggaaat caactgattc catggaggct gtgaatgggg
1141 ctagcaatga attttctccc ttagctggtg aacagatatt ccagccagaa gaattggaac
1201 agttgttaca gtcactgcaa gaagactctc atatgggttc aactatctct gatcccccac
1261 attcatctat aacaaattta gctaagccag aggaagattg tctaatgttc tatgatgcac
1321 cctttgattc ttcaatgtgt gatgatggtt ttagacagct caatggattt cttggctccc
1381 catcgaccaa tctatctggt attgacatgg tggacgatgg tatgccgtac tatgatgcga
1441 tggatgataa cttgtttaat gatcttctga gctcagtaca gccatcagct ggtagcagtt
1501 cccatgcttt tagtgggcca gtccttactc aagaggtcaa caattcaacc tatacatata
1561 gtccaactca aaaggtttta gaacctaatt ttgtagttgg tgccccatca tctgctaggt
1621 tacctgaagc gggtagtcag ttaaattatg ttgttttacc agattcccag accaagagta
1681 gtctgatcgg gaagcgtttt gtaaagatac tggattcaat ctctgctccc cctgcttttg
1741 cagcagcaga gttcccagct agccttcgca aatccttggc tcctatttct ggagctcatc
1801 acaacactat ccgtgtctct gctgaagtaa tcagcatagg aagtttaact cctgattctc
1861 aagataagtg gtcccttgag aaggatgaag gcatggagct gctcttctcg gcaggttttg
1921 agcctgatac ccgtgtacac tttggctgca acacaataac cgcagtactg cgtggtggct
1981 tctgcctctt cttcttttca gcaataatgc tcttggtgag ctacgaggtg ggcatgtgca
2041 tctatggcaa gtaggcctgc tggtattgga gacgttaaga acatgacgtt aggtaatcct
2101 atctgtattt gaggcaaact agggacctcc tgctgctggc ttaatgtatt gcactgcatg
2161 acattacatg acctccatgt gttgaacaag ggctgaggct gtttaactat agcactagca
2221 gtaccgtttt gcagctcgag agagctagta gtgtatgtat gaattcctca ggtgctattc
2281 gtagtagtaa gcgcgaattg attattatca gttcatgatg gtgctactat tcatattcat
2341 gtttctggtt ggcatgggcg gtgctagtgc aaactgcaga gtgctgtaaa tattccccaa
2401 atctgcaatg aattgaacga gggtgcattt gcccttatga ctgttgcggt gttgcaggtt
2461 tttgaatgag aaggaaagat tactatgtag aaaacgctgt gttgtatttg tcggtcgcag
2521 gcatctggtg gtaaattctg ttactgaaga aagtccttgt cgctatatat ttgtgtgttt
2581 acttatgctc ttgcctggaa taaaactcga ggatcttttc ctttgc
//