LOCUS AK120452 4326 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013103K24, full insert
sequence.
ACCESSION AK120452
VERSION AK120452.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 4326)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..4326
/clone="J013103K24"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..4326
/db_xref="Osa1:LOC_Os06g05359"
/db_xref="RAP-DB:Os06g0146100"
/note="(RAP Annotation release2) Disease resistance
protein family protein"
/note="(Rice Genome Annotation Project) NBS-LRR disease
resistance protein, putative, expressed"
/note="mapping to R06-TIGRv4S1-000136F (Chr.6: short
arm=2409176, long arm=2417569, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 1284 a 908 c 1004 g 1130 t
ORIGIN
1 ggtgttgctc actgcaagcc ctagttaagc atttcttacc acagaaagcg ctggcagatc
61 gaactagcta gtcctctctc cgatccactc gtcaggatcg tcaggctaat tcttttgtgc
121 gcagtgagcg agtggcgcca gacgaatcca gcgatggggg atacggtggt gagcatggcg
181 aggtcactgc tcggcggtgc catcgcggcg gcttcttccg ccgctcgcca ggagatgagc
241 atgctgatcg gtgtacaaaa cgacatctgg tacataaaag acgagctcaa gactatgcac
301 gcattcctaa gggccgccga ggttacaaaa gagaaagatg aactggttaa agtatgggca
361 gagcaagtga gggatctagc atatgacatt gaagattgcc ttgaagagtt tacaatccat
421 gtgaagcacc aaagcctctc acggcagctg atgaagctcc ggcatcgcca ccgaattgct
481 gtccagattc ggagcctcaa gctaagggtc caagaagtga gcaatcgaaa catgcggtat
541 aattttatta agtctgctcc ttctagagag atggatgact tttcaaccaa catggaaatg
601 actcgctacc aagctgctca ctatgttgat gaagctaagc ttgttggatt tgatgggccc
661 aaaaaggaga tcctgaagat gatatcaggc agtgaagatg tagaagtcca gacaatttgg
721 atagttggag ctggaggtct tggcaagact actcttgcaa agaaggttta tgaaagctca
781 aatatcacaa gcatgttccc atgccgtgct tggatcactg tatcacagtc tttcgatgtc
841 atggatttat tgaaggacat gatcaagcaa ctcctaggaa aagagtcact ggataatctc
901 tttacaaaat ataaagaggt gaagataaag gagaacaacc ttacggatca cctaaaggaa
961 tggctcagaa ataaaaggta ttttcttgtt ctagatgact tatggagcac aaaagcatgg
1021 gattgcctca aacctacttt atggggaaat aatagggaag gtagccgact tgtagtaaca
1081 acaagaaata gagacctagc cgaaggcagt tctagcccac tagtctaccc ccttcaaaca
1141 ttacatagag aagatgctac caaattgttg ttggcaaaaa ccaacaaaag tttatgtgac
1201 ataaacaaag atggaatgaa tgaaacattt gaaaagatac taaagaaatg tggaggtcta
1261 ccactagcta tcatcacaat tggtggactt ctagctgcca aagatgtcaa agagtgggat
1321 ggattatatg cacaaattcc atcggaactt gagaacaacc caagctttga agtaatgagg
1381 caggtgttag ccttgagtta caagtacttg ccatctcatc ttaagccatg ctttctatat
1441 ctaagcatct ttcccgagga ttttgagatc caaaggaaac gtctagtgta tagatggatt
1501 gcagaaggtt ttattagagc tagagatggg gtaagcattg tggatgttgc gataaaatat
1561 tttaatgatt taatcaaccg aagtttgatg caaccatcaa gagtgaatat ggaaggaact
1621 atcaagagct gtcgagtcca cgatatcata cgcgatatca tgatatcaat ttctagagaa
1681 gaaaaatttg tgtgccggat agatgataaa gaaacttgtc tgatggagga aaacatccac
1741 catgtggcct tctacaatag caatagctca gagatagcca tggacttgaa ccaagtccgg
1801 tcattaacag tgtttggtga gagacataaa gaactaacac ctttgctatg ttcaccccaa
1861 gtaaggatgt taagagtctt ggattttcaa ggagttagat ttggaatgac acaaaaagag
1921 atggaccata tatggtcggt gctccacttg aaatatatga atattcggtg tgactacaat
1981 cttcctaact ccagtggata ttcaaaaatt tacagaattc caaggtctat agggaaatta
2041 caaggcttac gagttttgga catatcaaat acttgcataa catcactgcc aactgagata
2101 tgtgaactcc ggagtctcaa tatcctccgt tgtacaagaa aagaatacta cgagttcttt
2161 gatccatcta aacctataca atgtttattt gctttatcgt gcattcatgt aacgatggct
2221 ttggctgatt cagaccagcg tcatgaaata actgctgagc tacacatggc ttgttctact
2281 cgctggttta gtacatgcgg tgtgagggta cctatgagaa ttggaaactt aaaacagctt
2341 caagaactag ggtatgtgga tatcaggcta actagtagca aagcagtgaa agagctgggg
2401 gagcttagcc agctaaaaaa attaaggttg cgaataaatg gtgccacaca acgaaaatgc
2461 aaggtgcttc gtgaagccat tgagaagctc tcgtcccttc aatctctccg cataaatgct
2521 ttcgacgtat cttcattgag aaatctcgag tggctacatt atatttcctc tcctcctccc
2581 tttttgaaga acctcacttt ggaaggatgt attaaggaga ttgactggct tagggagttc
2641 acacacctgg tgaagattca cttattcgga agcaaactga aggaaggtaa aacagtacag
2701 atactcgggg aactgcccaa cctcatggtc ctgcagcttc ggtggggcgc ttatgttggg
2761 gtgaagctat tgttccgagc agaagcattc ccaaaactca ggaagcttga gattcggttt
2821 ctagaggacc taagagagat gagatttgag gagcgcacct cgccccaaat ggaaacaata
2881 gaaatctctc actgcaggtt ggaatcaggg attattggga ttaagcatct tccgaagctc
2941 aaggagattt cactccgttg gaactgtgaa gtggcaaggc ttggccagct gctagaagag
3001 gtgaaagcaa accccaatcg tcctgttctg ctattgtata acgacccatc caagcacgac
3061 ttaggggaca cccaagaagg gtcaggtaca ccagtggaag caaatgaacc cccgaagaat
3121 gtgggcgaga gctcgcaatc caaccaaggt gaagatgatg atgacgacca gcaacagcct
3181 atcacatcaa cagagatcat gcctgcagat gcagaccccg ctgtctctag ctgattaacc
3241 tctccttcgt gatgattaac actacaatca cagcaatggt gatcaaatct agcgagtggc
3301 cagctcgagt tctgtattgc ttgttgtctc cccctgcctg gtgtacccaa ggcttaggtc
3361 actgtctctt ctctcaccat gccgcttgtg tggagtttga gtacaacggc gcacagcctg
3421 attggtttct gaacctcacc ctgttgctga tgatttgctt tctgagagcc agcagcaata
3481 caaaggatct cgatatcgat gcgctggaga agtgcacttt cagtagggca cctccaggtg
3541 aatgaacatc ccatccattg tgtgctgtca gcagaaagac cgaagcaagc acaattgcat
3601 gggctgcaag tgatctggac actgaattaa cactggaagc agcacgcagt cccttgctga
3661 gctagtagag agctaatgac acacttgaag accaatgctt gtctctgaat tatgaagaat
3721 gaagtgatct tattgataac agcttgtgat cgcaaatatt tgggcccgta ttcatctcaa
3781 gggctagtcg cacagcccca agtgcagcat tgcaagtact tttcttgttg caagcgagga
3841 ctacctcacc cgagtttgcg tcctctgtga ccaacaagaa gaaacaatcg atcacatcct
3901 aattataatt tgctgtccgg aagcacttca actttggtgg atcatcctca ttgcagttgg
3961 ccaacttcgt tgttttcaca atccttcttc atcctatggt ggtgtgacaa cgggaatgat
4021 cgtcatccta atagcctagt ctattttgaa ggaaagaaac aacagtgttt tcaacaatat
4081 aagagcaaat cctgggcaga agtggctgcc gctgctgcag cagaactgaa gaagcagcag
4141 taagagggtc atgtcctagt cgcatattca tcccgcgaga attagcctat ccttttgcct
4201 agcctttttt gttcctttta tttctttata tttacatatt tcttgttgtt tgtgcgctga
4261 tgtacatcac ttccaaattt ggtgtcattc ttgtttacat agtcgcaaat tcgtactact
4321 gtttcc
//