LOCUS AK119172 1661 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-037-A11, full insert
sequence.
ACCESSION AK119172
VERSION AK119172.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1661)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1661
/clone="001-037-A11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1661
/db_xref="Osa1:LOC_Os03g08010"
/note="(Rice Genome Annotation Project) elongation factor
1-alpha, putative, expressed"
/note="mapping to R03-TIGRv4S1-000294F (Chr.3: short
arm=4073682, long arm=4076577, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 373 a 452 c 438 g 398 t
ORIGIN
1 ctcccatctc accccgccgc cgccgccgcc gcagcctcct caaggctgct cccatcctct
61 ccttcgagtt agcttcctcc ttattcaacc atgggtaagg agaagacgca catcaacatt
121 gtggtcattg gccacgtcga ctccggcaag tcgaccacca cgggccatct gatctacaag
181 cttggaggta tcgacaagcg tgtgattgag aggttcgaga aggaagccgc tgagatgaac
241 aagaggtcct tcaagtacgc gtgggtgctt gacaagctca aggccgagcg tgagagaggt
301 atcaccatcg atatcgccct gtggaagttc gagaccacca agtactactg cacggtcatc
361 gatgcccctg gtcaccgtga cttcatcaag aacatgatca cgggtacctc ccaggctgac
421 tgtgccgtgc tcatcattga ctccaccact ggtggttttg aggctggtat ctccaaggat
481 ggccagaccc gtgagcacgc tcttcttgct ttcactcttg gagtgaagca gatgatctgc
541 tgctgcaaca agatggatgc caccactccc aagtactcca aggcccgtta cgatgaaatc
601 gtgaaggaag tctcatccta cctgaagaag gtcggctaca accctgacaa gattcccttc
661 gttcccatct ctgggtttga gggtgacaac atgattgaga ggtccaccaa ccttgactgg
721 tacaagggcc ccaccttgct tgaggctctt gaccagatca acgagcccaa gaggccatca
781 gacaagcccc tgcgtcttcc ccttcgggac gtgtacaaga tcggtggtat tggcaccgtg
841 cctgtgggtc gtgttgagac tggagtcctc aagcctggta tggtggtgac ctttggtccc
901 agcggcctga ccactgaggt caagtcggtt gagatgcacc acgaggctct ccaggaggct
961 cttcctggtg acaacgtcgg gttcaacgtg aagaacgttg cggtgaagga tctgaagcgt
1021 gggtacgtgg cctccaactc caaggatgac cctgccaagg aggctgccag cttcacctcc
1081 caggtgatca tcatgaacca ccctggccag atcggcaacg gctacgcccc agtgctggac
1141 tgccacacct cccacattgc cgtcaagttt gctgagctgg tgaccaagat cgacagacga
1201 tctggtaagg agctggagaa ggagcccaag ttcctcaaga acggtgatgc tggtatggtt
1261 aagatgattc ccaccaagcc catggttgtg gagaccttct ctgagtaccc tcctcttggt
1321 cgttttgccg tgcgggacat gaggcaaacg gtggctgttg gcgtcatcaa gaacgtggag
1381 aagaaggacc caaccggtgc caaggtgacc aaggctgccg ccaagaagaa atgagcctcg
1441 ttcaagtggt gctttccata tctgcatttg agatatctag ctcttttagt actcgttaag
1501 ttttgtcgac ggtcatttca gttgttgcat tgaccgttaa tatctgctcg ctttgtgcac
1561 tatgtcagtc atttaaaact ctattttctg ttcggtttaa acttggatgt taagacttat
1621 tattgccctt cgactgttgt ggaatgcgag tatacattgc t
//