LOCUS AK111926 1901 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:001-014-C09, full insert sequence. ACCESSION AK111926 VERSION AK111926.1 KEYWORDS oligo capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1901) AUTHORS Kikuchi,S. TITLE Direct Submission JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Rice full-length cDNA JOURNAL Unpublished (2002) REFERENCE 3 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 32K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1901 /clone="001-014-C09" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..1901 /db_xref="Osa1:LOC_Os05g30870" /note="(Rice Genome Annotation Project) serine/threonine-protein kinase NAK, putative, expressed" /note="mapping to R05-TIGRv4S1-000563F (Chr.5: short arm=17845264, long arm=17849124, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 478 a 411 c 468 g 544 t ORIGIN 1 attgctgcac acactttcac ttttcgtgaa cttgctgctg ccactaagaa cttcagacaa 61 gattgtctat tgggggaggg aggttttggc cgcgtatata aaggacactt ggagaatggg 121 caggctgttg cagtgaagca acttgatcgc aatggacttc aaggaaatag agagtttctg 181 gttgaagtcc ttatgctcag tctattgcac catgataacc tggttaacct aattggatac 241 tgtgctgatg gggatcaacg tctccttgta tatgagttta tgccattggg atcacttgag 301 gatcatttgc atgatattcc acctgacaag gaacctctcg actggaatac acggatgaag 361 attgctgctg gtgcagccaa gggcttggaa ttcttgcatg acaaggcaaa tcctcctgtt 421 atttacaggg atttcaagtc atcgaacatt cttcttggtg agggatacca tccaaaacta 481 tcagactttg gcctggcaaa acttggccct gttggtgaca aaactcatgt ttcgacacgt 541 gttatgggaa cttatggcta ctgtgcccca gaatatgcga tgactgggca gcttactgtt 601 aaatctgatg tgtatagttt tggtgttgtg ttccttgaac tgattactgg ccgcaaagca 661 atcgacaaca ccaaaccact tggagagcag aacctagtgg catgggcccg tcccctgttt 721 aaagaccgca ggaaatttcc taaaatggct gatccattac ttgcgggccg atttcctatg 781 cggggcctgt atcaggcttt agcagttgct gcaatgtgtt tgcaggagca agctgccact 841 aggcctttta taggagatgt ggtcactgct ctttcatatc ttgcttcccg gacatatgat 901 ccaaatacac ctgttcagca cagtcggagc aatgcatcta cccctagggc cagaaaccgt 961 gttggtgcga attttgacca gcgtcgtctt cactcaccaa atcaccaaca atctccagat 1021 ttaaggaaag aaggcaccac aacatcaaaa tatgaagctg aggttagcag gactaattct 1081 ggcagtggct ctggtcgacg agctggcttg gacagcatgg atgtgacagg ttcacagatg 1141 ggtagtcctg ctcacgcagg aaggaagagg gaatcatcgc ggagtactga taggcagcgt 1201 gcagtcgcag aggccaaaac atggggggag aattcaagag aaagaaagtg gccaaatgct 1261 cgtggcagct ttgatagtac aaatgagtaa acctctgaag cagaaggttc agttaagtcg 1321 tcattctagg ggaaaaaaaa agatgaatca cttgcagaac ccaactgggt cgaattaggt 1381 acatggggca ttttcgctcc atctcggctc tgcggtctat gtgaatagag cttctctttt 1441 tcttttttct gtcctggaga caccaccgct gcttcagagc tctcctctcg tccatacgaa 1501 tagcatcacc gcgatctcat cgtcgacgcg cctattcctg gcgtccattc ctcgtgattg 1561 atcatgcaaa tgtgcctttt attcatcatg aagacagaaa caccgtttgg ctggaaatgt 1621 aggtagaaag caaaagagaa aatttgctct ggagctatcc attgggtatc tcatgtcgat 1681 gttgttgcat gatgagtgtc agcggctgca ccattgttcc tgagtgttct agctctatgt 1741 gaagtgaagt ctgcgtaccg agggatgtga tgttcttttt tcttttcttt tcttttcttt 1801 ttgtctcaat ggtttgtacc tagggggtac ggcattttac ctgtgtttca tacacctgtc 1861 atttgacaat ttcatgtcgg agttatctgt tgttttatct c //