LOCUS AK111832 2298 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023128O09, full insert
sequence.
ACCESSION AK111832
VERSION AK111832.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2298)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Rice full-length cDNA
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2298
/clone="J023128O09"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2298
/db_xref="Osa1:LOC_Os05g30870"
/db_xref="RAP-DB:Os05g0372100"
/note="(RAP Annotation release2) Similar to Receptor
protein kinase-like protein"
/note="(Rice Genome Annotation Project)
serine/threonine-protein kinase NAK, putative, expressed"
/note="mapping to R05-TIGRv4S1-000563F (Chr.5: short
arm=17841702, long arm=17849140, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 530 a 548 c 590 g 630 t
ORIGIN
1 gactcttgcc cctgggctga cttttgccct cccttgggca tccatctcct ctccctccct
61 cccctcccct cccatcccta cccccaaaat cgccgaccga ccgcccccaa atcccatcca
121 agagccgtcg cctcctccaa agatcggatt tcgagacccc ccagatcggg gggagagatc
181 cccgtgtcgt ctggtgtggt gggtcggcct ccgccccccg gccgccgcgc ttctcttgat
241 ctttctttct tttttttgat ttttttgcgt ttcccctccg ggagagggga ggggaggagg
301 gttcttggat gggctgcttt ccgtgcttcg ggtcgggcgg caagggggag gcgaagaagg
361 gcggcggcgg gcgcaaggac ggcggctcgg cggatcgccg cgtcgcccgg gtcggatcag
421 ataaatcaaa atcacagggt ggattggact ctaggaagga tgcattcatc ccaagggatg
481 cgaatggtca acctattgct gcacacactt tcacttttcg tgaacttgct gctgccacta
541 agaacttcag acaagattgt ctattggggg agggaggttt tggccgcgta tataaaggac
601 acttggagaa tgggcaggct gttgcagtga agcaacttga tcgcaatgga cttcaaggaa
661 atagagagtt tctggttgaa gtccttatgc tcagtctatt gcaccatgat aacctggtta
721 acctaattgg atactgtgct gatggggatc aacgtctcct tgtatatgag tttatgccat
781 tgggatcact tgaggatcat ttgcatgata ttccacctga caaggaacct ctcgactgga
841 atacacggat gaagattgct gctggtgcag ccaagggctt ggaattcttg catgacaagg
901 caaatcctcc tgttatttac agggatttca agtcatcgaa cattcttctt gaatatgcga
961 tgactgggca gcttactgtt aaatctgatg tgtatagttt tggtgttgtg ttccttgaac
1021 tgattactgg ccgcaaagca atcgacaaca ccaaaccact tggagagcag aacctagtgg
1081 catgggcccg tcccctgttt aaagaccgca ggaaatttcc taaaatggct gatccattac
1141 ttgcgggccg atttcctatg cggggcctgt atcaggcttt agcagttgct gcaatgtgtt
1201 tgcaggagca agctgccact aggcctttta taggagatgt gtcactgctc tttcatatct
1261 tgcttcccag gcatatgatc caaatacacc tgttcagcac agtcggagca atgcatctac
1321 ccctagggcc agaaaccgtg ttggtgcgaa ttttgaccag cgtcgtcttc actcaccaaa
1381 tcaccaacaa tctccagatt taaggaaaga aggcaccaca acatcaaaat atgaagctga
1441 ggttagcagg actaattctg gcagtggctc tggtcgacga gctggcttgg acagcatgga
1501 tgtgacaggt tcacagatgg gtagtcctgc tcacgcagga aggaagaggg aatcatcgcg
1561 gagtactgat aggcagcgtg cagtcgcaga ggccaaaaca tggggggaga attcaagaga
1621 aagaaagtgg ccaaatgctc gtggcagctt tgatagtaca aatgagtaaa cctctgaagc
1681 agaaggttca gttaagtcgt cattctaggg gaaaaaaaaa gatgaatcac ttgcagaacc
1741 caactgggtc gaattaggta catggggcat tttcgctcca tctcggctct gcggtctatg
1801 tgaatagagc ttctcttttt cttttttctg tcctggagac accaccgctg cttcagagct
1861 ctcctctcgt ccatacgaat agcatcaccg cgatctcatc gtcgacgcgc ctattcctgg
1921 cgtccattcc tcgtgattga tcatgcaaat gtgcctttta ttcatcatga agacagaaac
1981 accgtttggc tggaaatgta ggtagaaagc aaaagagaaa atttgctctg gagctatcca
2041 ttgggtatct catgtcgatg ttgttgcatg atgagtgtca gcggctgcac cattgttcct
2101 gagtgttcta gctctatgtg aagtgaagtc tgcgtaccga gggatgtgat gttctttttt
2161 cttttctttt cttttctttt tgtctcaatg gtttgtacct agggggtacg gcattttacc
2221 tgtgtttcat acacctgtca tttgacaatt tcatgtcgga gttatctgtt gttttatctc
2281 tacgagtaag ctgttctt
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