LOCUS AK110625 1312 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-169-B02, full insert
sequence.
ACCESSION AK110625
VERSION AK110625.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1312)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1312
/clone="002-169-B02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 34..1266
/db_xref="Osa1:LOC_Os01g74140"
/note="(Rice Genome Annotation Project) OsWRKY17 -
Superfamily of rice TFs having WRKY and zinc finger
domains, expressed"
/note="mapping to R01-TIGRv4S1-002060F (Chr.1: short
arm=43273624, long arm=43275520, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG98999.1"
/translation="MDGAMQESREYWRDGGDVVGEELLREILDETAAVHSNSNSNSNS
NSNSKEAEEEDEREYFAAAAADEQLQVEAPCGRRRRESMVNKLISTVYSGPTISDIES
ALSFTAAGDHQLLADGHNFAASSCSPVVFSPEKTLSKTMENKYTLKMKSCGNNGGLAD
DGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERAVDEPDTLIVTYEGLHLHYT
YSHFLHSTSSSSSSTTTQQQLQPQPQMMTNCKKKPKLHLHPLLHDDPPPPPPPPEMTT
MMIMQSFSIQQQQHDDDQLLQPAADDHLMVQAPPDDCYNINGSSSSGLMMSLDDDEQA
AGAGGLLEDVVPLLVRRPPPPICNNNNYYYSPATTCTSDNEYGSSASASPSSSVSVSS
WTTPMSPCIDMAILSNIF"
BASE COUNT 323 a 394 c 343 g 252 t
ORIGIN
1 aagcaagtag cagcagcagc ttaggttgat catatggatg gtgcgatgca agagagcaga
61 gagtattggc gcgacggcgg cgatgtcgtc ggagaggagc tcttgaggga gatcctcgat
121 gagaccgccg cggtgcattc caattccaat tccaattcaa attcaaattc caattcaaag
181 gaggcggagg aggaggatga gagagaatat tttgccgcag ctgcagcgga tgagcagctg
241 caggtggagg ctccttgcgg gcggcggcgg cgggagtcga tggtgaacaa gctcatctcc
301 acggtgtatt ctgggccaac catcagcgac atcgagagcg ctctctcctt caccgccgcc
361 ggcgaccatc agctactcgc cgacggtcac aatttcgctg caagtagctg tagcccagtg
421 gttttctcgc cggagaagac gttgagcaag acgatggaga acaagtacac actgaagatg
481 aaaagctgtg ggaataatgg tgggctcgca gatgatgggt acaaatggag aaagtatggc
541 cagaaatcca ttaagaacag cccaaacccc aggagctact accggtgcac gaatccgcgg
601 tgcaacgcga agaagcaggt ggagcgagct gtggacgaac ccgacactct gatcgtcacc
661 tacgagggtc tccacctgca ctacacctac tctcacttcc tccactccac ttcttcctcc
721 tcgtcgtcta ctaccaccca acaacaactg cagcctcagc ctcagatgat gaccaactgc
781 aagaagaagc ccaagctgca cctgcacccg ctgctgcacg acgacccacc cccaccccca
841 ccgccgccgg aaatgacgac catgatgata atgcagagct tcagcatcca gcaacaacaa
901 catgatgatg atcagctgct gcagcctgct gcagatgatc acttgatggt gcaggctccc
961 cccgatgatt gttacaatat taacggcagc agcagcagcg gcttgatgat gagcttggac
1021 gacgacgagc aggccgccgg cgccggcggg ctactggagg acgtggtgcc tctgctggtc
1081 cgccgcccgc cgccgcccat ctgcaacaac aacaactact actactcgcc ggccaccacc
1141 tgcacctctg acaacgagta cggctcgtcg gcgtcggcgt cgccgtcctc ctccgtctcc
1201 gtctccagct ggactactcc catgtctccc tgcatcgaca tggccatact ctccaacatc
1261 ttctagctat attcaaatta atgaaatttc atctagtatt ctctagctag ct
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