LOCUS AK109856 1735 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-148-G05, full insert
sequence.
ACCESSION AK109856
VERSION AK109856.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1735)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1735
/clone="002-148-G05"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 181..1503
/db_xref="Osa1:LOC_Os01g54550"
/db_xref="RAP-DB:Os01g0749300"
/note="(RAP Annotation release2) Similar to Heat shock
factor"
/note="(Rice Genome Annotation Project) heat shock
factor, putative, expressed"
/note="mapping to R01-TIGRv4S1-001403F (Chr.1: short
arm=31697260, long arm=31699576, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG98932.1"
/translation="MEGGGGGGSLPPFLSKTYEMVDDPSTDAVVGWTPAGTSFVVANQ
PEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQWEFANEDFIKGQRHRLKNIHRR
KPIFSHSSHSQGAGPLTDNERKDYEEEIERLKSDNAALSSELQNNTLKKLNMEKRMQA
LEEKLFVVEDQQRSLISYVREIVKAPGFLSSFVQQQDHHRKKRRLPIPISFHEDANTQ
ENQIMPCDLTNSPAQTFYRESFDKMESSLNSLENFLREASEEFGNDISYDDGVPGPSS
TVVLTELHSPGESDPRVSSPPTRMRTSSAGAGDSHSSRDVAESTSCAESPPIPQMHSR
VDTRAKVSEIDVNSEPAVTETGPSRDQPAEEPPAVTPGANDGFWQQFLTEQPGSSDAH
QEAQSERRDGGNKVDEMKSGDRQHLWWGKRNVEQITEKLGLLTSTEKT"
BASE COUNT 497 a 404 c 421 g 413 t
ORIGIN
1 aatccgagag ggatttttcc tcgcaaccaa ccaaaccaac caaaccccca accaagcgag
61 caagccgcct tcgccggggg ggcccccacc ctgacggcaa ccctagccct ccgatcaccg
121 gcgctgagac tgatcccgcc gccgtaggag gaggaggagg aggtggtggt ggtggtggtg
181 atggaggggg gcggcggggg cgggtcgctg ccgccgttcc tgagcaagac gtacgagatg
241 gtggacgacc cgtcgacgga cgcggtggtg gggtggacgc ccgccggcac cagcttcgtc
301 gtcgccaacc agcccgagtt ctgccgggat ctgctcccca agtacttcaa gcacaacaac
361 ttctccagct tcgtgcgaca gctcaacacc tatggcttta ggaaagtaga tccagaacaa
421 tgggaatttg caaatgagga tttcataaaa ggacagcggc accggttgaa aaatatacat
481 agacgcaaac ctatattcag ccattcatca cacagtcagg gtgctggacc attaacagat
541 aatgaaagga aagactatga ggaagaaatc gagaggctca aatccgataa tgcagcactg
601 tcctcagagc ttcaaaataa tacgttgaag aaacttaata tggagaaacg aatgcaggct
661 ttggaagaga agctatttgt tgtggaagat cagcagagga gtctgatatc atacgtcaga
721 gagattgtaa aggcaccagg atttctttct agctttgtac agcaacaaga tcatcacagg
781 aagaagagga gactgccaat accaatctcc ttccatgagg atgcaaatac tcaggagaac
841 cagatcatgc cttgtgactt gaccaactca ccagctcaga cattttacag agaatcattt
901 gacaagatgg aatcatcctt gaactcatta gaaaatttcc ttcgagaagc aagtgaagaa
961 tttggtaatg atatttcata tgatgatggt gtcccaggcc cttcttcaac tgttgttctc
1021 acagagctcc attcacctgg tgaaagtgat ccccgtgttt catcacctcc aacaaggatg
1081 cgtacttcgt cagctggtgc aggagattcg cactcctctc gtgatgtagc agagtctacc
1141 agctgtgcag aaagtcctcc tattcctcaa atgcattctc gtgtagatac acgagcgaag
1201 gtttctgaaa tagatgttaa ttcagaacct gctgttacag aaactggtcc atcaagagat
1261 caacctgctg aagagcctcc tgctgtcaca cctggtgcaa acgatggctt ctggcagcag
1321 tttcttaccg agcagcctgg atcatcagat gcacatcagg aggctcaatc agaacggcga
1381 gatggaggaa acaaggtgga tgagatgaaa tcaggagatc gacaacatct ttggtggggc
1441 aaaaggaacg ttgagcagat aacagaaaaa cttggacttc tcacctcaac ggagaaaacc
1501 tgacataatt ttgtttttct ttttgtagat gaaaaactat taattcagga acgctgacat
1561 tggtgccttc ctcagtgaga tatgttgact aacatctatt tcgcagtgta ccgtattttt
1621 tccatcatgt accgtaatgt atcatagtgc catacattca tctttggtcc attgacactt
1681 tctgatatca ttgtgcgtga tttctaaaat attctcaagt ttggttaaat gttac
//