LOCUS AK109795 1623 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-147-E06, full insert
sequence.
ACCESSION AK109795
VERSION AK109795.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1623)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1623
/clone="002-147-E06"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 193..1356
/db_xref="Osa1:LOC_Os03g63810"
/db_xref="RAP-DB:Os03g0855100"
/note="(RAP Annotation release2) Similar to WRKY
transcription factor 12"
/note="(Rice Genome Annotation Project) WRKY
transcription factor 14, putative, expressed"
/note="mapping to R03-TIGRv4S1-001818F (Chr.3: short
arm=35978096, long arm=35982752, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG98902.1"
/translation="MDMMEEEAANAATAQAAAAGDLADVVARANARAFLVSTPHHHPS
PLHPLPPPPMPQAPHQYYPAPQITIPYHHHHHGELRRPTTIAYTDAPVPFETAGPPST
VVDSYHHLTPGDAGYGMPRPLALQISQHALCGGGDVVMGGGGAGAADDGEEAIRISPL
TPSAHHQMMKRKNEVKKVVCIPAPPATSSRGGGGEVIPSDLWAWRKYGQKPIKGSPYP
RGYYRCSSSKGCMARKQVERSRSDPNMLVITYAAEHNHPWPMQRNVLAGYARSHHSTH
ATASSSRHKQQQQQQTNQLQPALITSSSSSSSSPFNLYADVVLGGQQANMMMTTEGAG
AGLGIQPSAADEVFAELEELEPDNPTMINANMQVYSTTSRPGVSSYDHQWHKF"
BASE COUNT 414 a 475 c 413 g 321 t
ORIGIN
1 aatcgagctg gtagtagccg gccagtagca ctctgagtgc gtgcactact agtgctcctg
61 caggcaaggc tggacgggag tgggagtgtg tgtaccagta ctagctacta gtgaatactg
121 aataggcagc agcaacagca gcagcagcta attaagcatc agacagaaac tagaaagagc
181 gagcacgcca ctatggatat gatggaggag gaggctgcca acgccgccac tgctcaagct
241 gctgctgctg gcgacctcgc cgacgtcgtg gcccgtgcca atgcacgcgc attcctcgtc
301 tccacccctc accatcaccc ctcacctctg catcctcttc ctcctcctcc catgcctcag
361 gcgcctcacc aatactatcc cgccccccag atcaccatcc cttaccacca ccaccaccac
421 ggagagcttc ggcgccctac caccatcgct tacaccgacg cacctgtgcc gttcgagacg
481 gcggggccgc catccacggt cgtcgactca taccaccacc tcacacccgg cgacgccggc
541 tacgggatgc cgcggccgct tgctctccag atctcccagc acgccctctg tggcggcggc
601 gacgtggtga tgggcggcgg aggcgcaggc gctgccgatg atggagaaga agccatcagg
661 atctcgccac tgacgccgtc tgctcatcat caaatgatga aaaggaagaa tgaggtgaag
721 aaagtggtgt gcatcccggc gccgccagcg acgagtagcc gtggaggtgg aggagaggtg
781 atcccgtctg atctatgggc atggaggaag tacggccaga aacccatcaa aggctctcct
841 tatccacggg gttactacag atgcagcagc tcaaagggat gtatggcgag gaagcaggtg
901 gagcgcagcc gcagcgaccc caacatgctg gtgatcacct acgcggcgga gcacaaccac
961 ccatggccga tgcaacgtaa tgtgctcgcc ggatatgccc gttctcatca cagtactcat
1021 gctactgcct ccagcagccg ccacaagcaa cagcagcagc agcagaccaa ccagctgcag
1081 cctgcactga tcacaagctc atcgtcttct tcctcctccc cattcaatct ctacgccgac
1141 gtcgtgctcg gtggccaaca ggccaacatg atgatgacga cggagggcgc cggcgctgga
1201 cttggcatcc aaccttcagc agctgatgag gtctttgcag agctggagga gttggagcct
1261 gataatccta ctatgatcaa tgcaaacatg caggtgtact ccaccaccag caggccaggg
1321 gtaagcagct atgatcatca gtggcacaag ttctaataat taaaccatgc agtacctata
1381 tatatatata tcagaacttc aatattcgag agaggagatc agaggaaatt gaattctagc
1441 acgtacaatt aatacatcat gactatgcaa aatttacata tatatgatat gatggtcgcc
1501 tgtgcgatta ttagtgacca aattaaagat tgtcagagat ataggcgtgt acttacgctt
1561 atatgtatca cgctgaggta tactgtattt acaagaagat aaataaaata tccatatccc
1621 tct
//